Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c21
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical ...    29   4.1  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 587  GGEGKWHVEI-GDPIPDAISNSDCAEITECKD 679
            G + KW V + GDP+P  I   D  EI +C++
Sbjct: 2421 GSQLKWTVRVTGDPMPKVIWMRDGFEIPDCEE 2452


>AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.4 protein.
          Length = 143

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 324 FIVSNR*LTGSKSTMCNFIIQQYESFLLSFNCFHSFSFFLIHIGGEYL*CKHN-FKIILS 148
           FI S   ++   +++  +  +QY SF     C  SFS  +  +   Y   +HN F +I  
Sbjct: 23  FIASLAIISAKFNSVSVYEDKQYISFEWWIFCGLSFSMIINTVAAMYALAEHNRFLLIPH 82

Query: 147 IFVSKFIICFNSKQIFVFH 91
           IF+   I+C NS   +V H
Sbjct: 83  IFL--LILC-NSLACYVLH 98


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
           protein W05F2.7 protein.
          Length = 1424

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 303 LTGSKSTMCNFIIQQYESFLLSFNCFHSFSFFLIHIGGE 187
           LT SKST C+ +++  + F      FH     LI +G E
Sbjct: 276 LTSSKSTACSCLVKLLQQFDNQTGYFHRLDHKLIAMGQE 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,000,581
Number of Sequences: 27780
Number of extensions: 275710
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)