Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c18
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 2.1
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 2.1
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 2.1
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 24 4.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 4.9
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 24 4.9
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 23 6.5
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 23 8.5
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 23 8.5
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 23 8.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 8.5
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 23 8.5
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 2.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +2
Query: 131 DNKNLRSAYRTNP*QNTTARYDTKYFNTRTHDRFDPIVDFFDVTSYKDVKKK 286
D KN+R+AYR + + D YF+ T++ D++ YK+V +K
Sbjct: 512 DWKNVRTAYRPPFVPDLNSEIDAGYFDDFTNEN--------DMSKYKEVHEK 555
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 2.1
Identities = 7/25 (28%), Positives = 18/25 (72%)
Frame = -1
Query: 280 FYIFITRYVEEIYNRIESVVCTRIK 206
+ + + +Y E++YN ++ V+ +R+K
Sbjct: 54 YILVLHKYGEKLYNHVQDVIRSRLK 78
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 2.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -3
Query: 182 LCSVMGSSCMQSGDFYYLGIYGSPPWRH 99
L ++ + CM S +++ G + P +RH
Sbjct: 769 LLRILTTRCMLSAEYFCSGTFAPPDFRH 796
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 23.8 bits (49), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 206 FNTRTHDRFDPIVDFFDVTS 265
F R DR+DPI D + ++S
Sbjct: 40 FRERYADRYDPITDQYSLSS 59
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.8 bits (49), Expect = 4.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 27 LLRYRER*KTRTKHTVSLIWDFDLVS 104
L RY T KHT WDF L++
Sbjct: 616 LQRYTLELDTILKHTEQSSWDFQLIT 641
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 23.8 bits (49), Expect = 4.9
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 206 FNTRTHDRFDPIVDFFDVTS 265
F +R DR+DP+ D + +S
Sbjct: 36 FQSRYADRYDPVTDTYSYSS 55
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 23.4 bits (48), Expect = 6.5
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 99 VSPRWAAVNAKIIKISALHTGRTHDRTQPLAM 194
VSP W + I +S L ++H R P+ M
Sbjct: 662 VSPYWYILLIPIFTLSLLIVTQSHPRQWPIQM 693
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 23.0 bits (47), Expect = 8.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = -3
Query: 179 CSVMGSSCMQSGDFYYL 129
C +G +C+ D YYL
Sbjct: 460 CQALGGTCLYKRDGYYL 476
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 116 CRKCQDNKNLRSAYRTNP 169
C QD+ +L+SA+ +NP
Sbjct: 140 CLNQQDDHDLKSAFNSNP 157
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 179 CSVMGSSCMQSGDFY 135
C V+GSSC+ S +Y
Sbjct: 43 CCVVGSSCIYSNPWY 57
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.0 bits (47), Expect = 8.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 138 LLSWHLRQPTV 106
+L+W LRQPTV
Sbjct: 241 ILTWDLRQPTV 251
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 23.0 bits (47), Expect = 8.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 134 NKNLRSAYRTNP*QNTTARYDTKYFNTRTHDRFDPIVDFFDVTS 265
N + R ++ T+P + + + F R+ + +P V FFD+ S
Sbjct: 245 NLSSRYSHFTSPHIDDSQHFPPMEFFARSDELPNPFVPFFDLDS 288
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,197,277
Number of Sequences: 5004
Number of extensions: 22283
Number of successful extensions: 64
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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