Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c18
(286 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0953 - 9471342-9471420,9471848-9471976,9472106-9472313,947... 28 1.0
10_08_0083 - 14715517-14715595,14716022-14716150,14716280-147164... 28 1.3
05_04_0275 - 19650555-19650625,19650927-19651221,19651593-196518... 27 1.8
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 27 2.3
08_01_0811 - 7872886-7873261,7873446-7873861,7874253-7874262,787... 27 2.3
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 27 3.1
06_03_0869 + 25548853-25549074,25549191-25549251,25549912-255500... 27 3.1
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 27 3.1
10_01_0245 + 2566400-2567584 26 5.4
03_03_0152 + 14908778-14909344 26 5.4
01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898 26 5.4
07_01_0516 - 3850252-3852870 25 9.4
01_07_0169 + 41650339-41651217 25 9.4
01_05_0616 - 23684400-23685329,23686320-23686336,23687977-23688142 25 9.4
>08_01_0953 -
9471342-9471420,9471848-9471976,9472106-9472313,
9472619-9472682,9473557-9473598,9474016-9474120,
9474442-9474536,9474630-9474723
Length = 271
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 278 LHLYNSLRRRNLQSDRIGRVYAY*NI*CHSERLCSVMGSSCMQSGDFYYLGI 123
++LY L + + R+ RV +Y NI C S S+ G S +GD L +
Sbjct: 118 IYLYRDLFLKIFSAKRVKRVRSYGNILCESN--TSISGCSGCHNGDKELLNV 167
>10_08_0083 -
14715517-14715595,14716022-14716150,14716280-14716487,
14716789-14716852,14717727-14717768,14718175-14718279,
14718601-14718695,14718789-14718882
Length = 271
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -3
Query: 278 LHLYNSLRRRNLQSDRIGRVYAY*NI*CHSERLCSVMGSSCMQSGD 141
++LY L + + R+ RV +Y NI C S S+ G S +GD
Sbjct: 118 IYLYRDLFLKIFSAKRVKRVRSYGNILCESN--TSISGCSGCHNGD 161
>05_04_0275 -
19650555-19650625,19650927-19651221,19651593-19651895,
19651978-19652182,19652266-19652501,19652619-19652816,
19653785-19653907,19654227-19654514,19654618-19654794,
19655580-19655915,19656753-19656863,19656977-19657227,
19657431-19657566
Length = 909
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 104 STVGC--RKCQDNKNLRSAYRTNP 169
ST C ++C D+ NL ++YRTNP
Sbjct: 240 STTSCTPQQCGDHGNLFTSYRTNP 263
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 158 CMQSGDFYYLGIYGSPPWRHEIEVPDETNSVLSA 57
C++ Y G+ S PWR + +P+ S+L A
Sbjct: 308 CLRQHKAYQAGMLESHPWRPQRGLPERAVSILRA 341
>08_01_0811 -
7872886-7873261,7873446-7873861,7874253-7874262,
7874370-7875334
Length = 588
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 102 SPRWAAVNAKIIKISALHTGRTHDRTQPLAMTLNILIRVHTT 227
S W+ ++ I K+ + TGR+ Q TLN + RV +T
Sbjct: 435 SSPWSQLSEDIGKLLEMETGRSRRELQGQRSTLNTIDRVAST 476
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 155 MQSGDFYYLGIYGSPPWRHEIEVPDETN 72
++ G +YY I G WRH +P ET+
Sbjct: 500 LRHGKYYYKFIAGGQ-WRHSTSLPTETD 526
>06_03_0869 +
25548853-25549074,25549191-25549251,25549912-25550006,
25550094-25550127,25550551-25550605,25550687-25550729,
25551064-25551135
Length = 193
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 116 SPPWRHEIEVPDETNSVLSAS 54
S PWRH IE PD+ + + +S
Sbjct: 129 SAPWRHTIEGPDDMPAHIKSS 149
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 277 YIFITRYVEEIYNRIESVVCTRIKI 203
Y+F + EE YN +S+ CT +K+
Sbjct: 773 YLFKLKVKEETYNDEQSLKCTAVKV 797
>10_01_0245 + 2566400-2567584
Length = 394
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -3
Query: 179 CSVMGSSCMQSGDFYYLGIYG 117
C +G C+Q GDF Y ++G
Sbjct: 217 CISLGCRCIQIGDFLYWMLFG 237
>03_03_0152 + 14908778-14909344
Length = 188
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 162 RTHDRTQPLAMTLNILIRVHTTDSIR 239
R H RT+ +A LN L ++H+T + R
Sbjct: 9 RLHPRTRTIADLLNQLDQIHSTSATR 34
>01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898
Length = 632
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 84 WDFDLVSPRWAAVNAKIIKISALHTGRTHDRTQPLAMTLN 203
W D +SP + AVN K I + G T + P +N
Sbjct: 396 WVHDNISPYYPAVNIKYIAVGNEVVGGTTESILPAMRNVN 435
>07_01_0516 - 3850252-3852870
Length = 872
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 158 CMQSGDFYYLGIYGSPPWRHEIEVPDETNSVLSASF 51
C +SGD + L WRHE NS+L+ASF
Sbjct: 443 CGRSGDAHLL----FEKWRHEESFHIAWNSLLAASF 474
>01_07_0169 + 41650339-41651217
Length = 292
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 84 WDFDLVSPRWAAVNAKIIKISALHTGRTHDRTQPLAMTLN 203
W D +SP + AVN K I + G T + P +N
Sbjct: 65 WVRDNISPYYPAVNIKYIAVGNEVVGGTTESILPAMRNVN 104
>01_05_0616 - 23684400-23685329,23686320-23686336,23687977-23688142
Length = 370
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 164 SSCMQSGDFYYLGIYGSPP 108
S C+ DF LG+ G PP
Sbjct: 100 SGCLPGADFELLGLLGLPP 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,377,198
Number of Sequences: 37544
Number of extensions: 134858
Number of successful extensions: 323
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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