Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c18
(286 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41996-7|AAA83476.1| 298|Caenorhabditis elegans Hypothetical pr... 29 0.71
Z81487-2|CAB04000.1| 318|Caenorhabditis elegans Hypothetical pr... 28 1.2
X75331-1|CAA53080.1| 620|Caenorhabditis elegans acetylcholinest... 27 1.6
U58731-1|AAB00593.1| 620|Caenorhabditis elegans Abnormal acetyl... 27 1.6
Z93380-7|CAB07603.2| 335|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z82053-11|CAB04839.2| 335|Caenorhabditis elegans Hypothetical p... 27 2.9
U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated p... 27 2.9
U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated p... 27 2.9
AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin... 27 2.9
AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectr... 27 2.9
AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectr... 27 2.9
Z71262-5|CAA95818.1| 606|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical pr... 26 5.0
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ... 26 5.0
U49954-2|AAY86289.1| 192|Caenorhabditis elegans Hypothetical pr... 25 6.6
Z11115-12|CAA77452.1| 342|Caenorhabditis elegans Hypothetical p... 25 8.7
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 25 8.7
AF068712-1|AAC17779.1| 500|Caenorhabditis elegans Hypothetical ... 25 8.7
>U41996-7|AAA83476.1| 298|Caenorhabditis elegans Hypothetical
protein F38E1.10 protein.
Length = 298
Score = 28.7 bits (61), Expect = 0.71
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -1
Query: 280 FYIFITRYVEEIYNRIESVVC-TRIKIFSV 194
F +F +Y+ EI NRI SV C TR ++F +
Sbjct: 90 FAVFDMKYIVEIPNRIPSVKCFTRNRLFDM 119
>Z81487-2|CAB04000.1| 318|Caenorhabditis elegans Hypothetical
protein C54E10.3 protein.
Length = 318
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 247 IYNRIESVVCTRIKIFSVIASGCVLSWVRPVCRAEIFIILAFTAAHRGDTRSKSQMRLTV 68
IY+ I V ++ FSV +S C + W A+ F + F R ++ +++ L
Sbjct: 95 IYDTIPGVWVCKMTAFSVNSSSCFIHWTWVAMYADRFCYIFFPFRFRRHSKFRTKCILCT 154
Query: 67 CL 62
L
Sbjct: 155 IL 156
>X75331-1|CAA53080.1| 620|Caenorhabditis elegans
acetylcholinesterase protein.
Length = 620
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 164 SSCMQSGDFYYLGIYGSPPWRHEIEVPDE 78
+SC+QS D Y+ YGS W ++ ++
Sbjct: 80 NSCIQSEDTYFGDFYGSTMWNANTKLSED 108
>U58731-1|AAB00593.1| 620|Caenorhabditis elegans Abnormal
acetylcholinesterase protein1 protein.
Length = 620
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 164 SSCMQSGDFYYLGIYGSPPWRHEIEVPDE 78
+SC+QS D Y+ YGS W ++ ++
Sbjct: 80 NSCIQSEDTYFGDFYGSTMWNANTKLSED 108
>Z93380-7|CAB07603.2| 335|Caenorhabditis elegans Hypothetical
protein T26E3.9 protein.
Length = 335
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 158 CMQSGDFYYLGIYGSPPW 105
C+ S YY+G+YG PP+
Sbjct: 156 CLLSFGTYYVGLYGVPPF 173
>Z82053-11|CAB04839.2| 335|Caenorhabditis elegans Hypothetical
protein T26E3.9 protein.
Length = 335
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 158 CMQSGDFYYLGIYGSPPW 105
C+ S YY+G+YG PP+
Sbjct: 156 CLLSFGTYYVGLYGVPPF 173
>U64854-2|AAK77611.1| 2257|Caenorhabditis elegans Uncoordinated
protein 70, isoform a protein.
Length = 2257
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 281 FLHLYNSLRRRNLQSDRIGRV 219
+ H +N L++ N+Q RIG+V
Sbjct: 259 YYHYFNKLKQDNIQGKRIGKV 279
>U64854-1|AAK77612.2| 2302|Caenorhabditis elegans Uncoordinated
protein 70, isoform b protein.
Length = 2302
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 281 FLHLYNSLRRRNLQSDRIGRV 219
+ H +N L++ N+Q RIG+V
Sbjct: 259 YYHYFNKLKQDNIQGKRIGKV 279
>AF261891-1|AAF72996.1| 2257|Caenorhabditis elegans beta-spectrin
protein.
Length = 2257
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 281 FLHLYNSLRRRNLQSDRIGRV 219
+ H +N L++ N+Q RIG+V
Sbjct: 259 YYHYFNKLKQDNIQGKRIGKV 279
>AF166170-1|AAD49859.1| 2257|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2257
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 281 FLHLYNSLRRRNLQSDRIGRV 219
+ H +N L++ N+Q RIG+V
Sbjct: 259 YYHYFNKLKQDNIQGKRIGKV 279
>AF166169-1|AAD49858.1| 2302|Caenorhabditis elegans beta-G spectrin
protein.
Length = 2302
Score = 26.6 bits (56), Expect = 2.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -3
Query: 281 FLHLYNSLRRRNLQSDRIGRV 219
+ H +N L++ N+Q RIG+V
Sbjct: 259 YYHYFNKLKQDNIQGKRIGKV 279
>Z71262-5|CAA95818.1| 606|Caenorhabditis elegans Hypothetical
protein F22D6.6 protein.
Length = 606
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -1
Query: 253 EEIYNRIESV-VCTRIKIFSVI-ASGCVLSWVRPVCRAEI 140
E +Y R V VC ++ V V++WV+P C E+
Sbjct: 106 ERVYRRCRIVDVCRNNELLKVFFIDDAVIAWVQPECLGEL 145
>Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical
protein F58G1.6 protein.
Length = 421
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 164 SSCMQSGDFYYLGIYGSP-PWRHEIEVPDETN 72
S C + G +LG YGSP R I P+ T+
Sbjct: 300 SGCFEIGTPVFLGNYGSPNSTRRSIMYPESTS 331
>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
protein Y43D4A.5 protein.
Length = 1648
Score = 25.8 bits (54), Expect = 5.0
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3
Query: 110 PWRHEIEVPDETNSV 66
PWR ++++P E+N V
Sbjct: 358 PWRRKLQIPSESNEV 372
>U49954-2|AAY86289.1| 192|Caenorhabditis elegans Hypothetical
protein Y102E9.5 protein.
Length = 192
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -3
Query: 197 CHSERLCSVMGSSCMQSGDFYY 132
C ERLCS++G YY
Sbjct: 87 CQQERLCSILGMHAFSGCKSYY 108
>Z11115-12|CAA77452.1| 342|Caenorhabditis elegans Hypothetical
protein ZK637.5 protein.
Length = 342
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 107 TVGCRKCQDNKNLRSAYRTN 166
TV CRKC + ++S Y T+
Sbjct: 282 TVSCRKCASRQAIQSKYLTD 301
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 25.0 bits (52), Expect = 8.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 283 FFYIFITRYVEEIYNRIESVVCTRIKIFSVIASGCVLSWV 164
F ++ T EEI+ +E+ KI SVIA VL WV
Sbjct: 567 FTFMTETSVAEEIHTAVETD-----KIVSVIACAAVLIWV 601
>AF068712-1|AAC17779.1| 500|Caenorhabditis elegans Hypothetical
protein T09H2.1 protein.
Length = 500
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 252 KKSTIGSNRSCVRVLKYLVS*RAVVFCHGFVLYAERRFLLS 130
KKS I R V L Y+ R +V +G RRF L+
Sbjct: 90 KKSNIFGARFAVGALNYIREGRGIVASNGEFWQEHRRFALT 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,600,433
Number of Sequences: 27780
Number of extensions: 125558
Number of successful extensions: 343
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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