Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c16
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512     31   0.84 
03_05_0976 - 29341981-29342229,29342388-29342621,29342771-293430...    30   2.0  
04_04_0785 + 28048368-28048372,28049387-28049447,28050083-280501...    29   3.4  
10_08_0919 + 21564245-21565699,21566876-21567022,21567170-215672...    29   4.5  
07_03_1261 + 25266976-25267169,25267275-25268235,25268335-252684...    29   4.5  
01_01_0058 + 440328-440437,440514-440733,441605-441805,441915-44...    29   4.5  

>03_05_0866 - 28370034-28371352,28371447-28371995,28372507-28373512
          Length = 957

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +2

Query: 32  YGPSTNLNLMKSAYGNEVFSDS-PDALIHYEFSFGMLKCYDNEKL 163
           YGPST+LN +   Y N+V S+S PD  IH E   G+ +  D++ +
Sbjct: 534 YGPSTSLNKLCPDY-NDVESESAPDTPIHIEDIDGLHELPDHKAM 577


>03_05_0976 -
           29341981-29342229,29342388-29342621,29342771-29343046,
           29343181-29343457,29343549-29343847,29344021-29344152,
           29344451-29344660,29344812-29344875,29346114-29346260,
           29346477-29346760
          Length = 723

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +2

Query: 158 KLIFG--PKMKNTISSWDMPTRYWFFTNIYKRFSKSNAEVRSASSFLVWTIWNGPFLS 325
           KL+ G  P +   +S + +P    FF++I    S+S  +  +    L +TIWN  F++
Sbjct: 384 KLVTGYLPSVVLLLSLYTVPPLMMFFSSIEGSISRSGRKKSACCKILFFTIWNVFFVN 441


>04_04_0785 +
           28048368-28048372,28049387-28049447,28050083-28050151,
           28050249-28050303,28050386-28050433,28050534-28050629,
           28050895-28051051,28051250-28051340,28051431-28051559,
           28051650-28051803,28052147-28052241,28052316-28052498
          Length = 380

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 155 EKLIFGPKMKNTISSWDMPTRYWFF--TNIYKRFSKSNAEVRSASSF 289
           +K I  PK+ N  S +D P+R+ FF  T+IY  ++  +  +  A  +
Sbjct: 192 DKKITIPKVANVCSGFDDPSRWTFFDLTSIYDDYADKSTTIVEAEFY 238


>10_08_0919 +
           21564245-21565699,21566876-21567022,21567170-21567286,
           21567580-21568176
          Length = 771

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 95  SPDALIHYEFSFGMLKCYDNEKLIFGPKMKNTISSWD 205
           S DA  H+ F FG   CY +  L + P ++  +  W+
Sbjct: 502 SVDATYHHRF-FGSASCYLDHVLKYVPSIREQLQDWE 537


>07_03_1261 +
           25266976-25267169,25267275-25268235,25268335-25268430,
           25269154-25269290,25269394-25269601
          Length = 531

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +2

Query: 218 YWFFTNIYKRFSKSNAEVRSASSFLVWTIWNGPFLSQIIIS---TTLWVYMQLESEYSEL 388
           YW FT++ +  SK  A  R  +   ++  +       + +S    T  V+ +   E++E 
Sbjct: 371 YWIFTSLSRTISKLKAR-RMTAKLEMYRKFANSLTIAVALSLGWITFEVHFKTTDEHNER 429

Query: 389 YNTSGAMKLPWD-IGFSIMRVFCLIYLTP 472
           +  +  +   W+ I F ++   C+++ TP
Sbjct: 430 WRVAWVIPAVWELISFFLLCTICILW-TP 457


>01_01_0058 +
           440328-440437,440514-440733,441605-441805,441915-441985,
           442058-442217,444166-444492,444529-444759,444869-445249,
           445573-445648,445736-445799,446334-446469,447666-447710,
           447851-447916
          Length = 695

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +2

Query: 2   YPAKXQPIPGYGPSTNLNLMKSAYGNEVFSDSPDALI------HYEFSFGMLKCYDNEKL 163
           YPA  +     G  TN+NL    Y + V SD  + ++      H ++SFG     D + +
Sbjct: 197 YPAPREVELDAGTETNINLNHEIYYHVVGSDQSEDILCWKDPEHPKYSFGASVTEDGKYI 256

Query: 164 IFG 172
           I G
Sbjct: 257 ILG 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,655,939
Number of Sequences: 37544
Number of extensions: 324490
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)