Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c16
         (680 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-1|AAA81391.1|  480|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical pr...    31   0.76 
Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical pr...    31   0.76 
AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    29   2.3  
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    29   2.3  
AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...    27   9.4  

>U40410-1|AAA81391.1|  480|Caenorhabditis elegans Hypothetical
           protein C54G7.2 protein.
          Length = 480

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +2

Query: 179 MKNTISSWDMPTRYWFFTNIYKRFSKSNAEVRSASSFLVWTIWNG 313
           +K T+  W++ T +W     Y+R  KS   +R+ +++ +  +W+G
Sbjct: 322 LKETLDGWNIQTGFWLRKVGYERAPKS---IRTVATYTLSAVWHG 363


>Z81509-7|CAJ85751.1|  544|Caenorhabditis elegans Hypothetical
           protein F21A3.2b protein.
          Length = 544

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +2

Query: 227 FTNIYKRFSKSNAEVRSASSFLVWTIWNGPFLSQIIISTTLWVYMQLESEYSELYN---- 394
           FT+   RF+  N+E     S+ V  +    F ++    T  W Y Q+E++Y+ L N    
Sbjct: 275 FTHYVNRFTMPNSEHNLFYSYDVGPVHFVVFSTEFYFYTQ-WGYHQMENQYNWLINDLKK 333

Query: 395 -TSGAMKLPWDIGFSIMRVFC 454
             S    +PW I      ++C
Sbjct: 334 ANSNRHNIPWIITMGHRPMYC 354


>Z81509-6|CAB04153.2|  431|Caenorhabditis elegans Hypothetical
           protein F21A3.2a protein.
          Length = 431

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
 Frame = +2

Query: 227 FTNIYKRFSKSNAEVRSASSFLVWTIWNGPFLSQIIISTTLWVYMQLESEYSELYN---- 394
           FT+   RF+  N+E     S+ V  +    F ++    T  W Y Q+E++Y+ L N    
Sbjct: 162 FTHYVNRFTMPNSEHNLFYSYDVGPVHFVVFSTEFYFYTQ-WGYHQMENQYNWLINDLKK 220

Query: 395 -TSGAMKLPWDIGFSIMRVFC 454
             S    +PW I      ++C
Sbjct: 221 ANSNRHNIPWIITMGHRPMYC 241


>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 314 PFLSQIIISTTLWVYMQLESEYSELYNTSGAMKLPWDIGFSIMRVFCLIYLTPCFILNNS 493
           P L+++  S ++   ++        Y T   ++L WD   +++    LI+ T CF+   S
Sbjct: 468 PELNRVASSNSIQSVLKPTEIQLTPYCTRNIVELEWDWVAAVLERVFLIFFTICFLF--S 525

Query: 494 ATLLKYYGSIFW 529
           A  +  YG   W
Sbjct: 526 AIGINLYGWYIW 537


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 314 PFLSQIIISTTLWVYMQLESEYSELYNTSGAMKLPWDIGFSIMRVFCLIYLTPCFILNNS 493
           P L+++  S ++   ++        Y T   ++L WD   +++    LI+ T CF+   S
Sbjct: 468 PELNRVASSNSIQSVLKPTEIQLTPYCTRNIVELEWDWVAAVLERVFLIFFTICFLF--S 525

Query: 494 ATLLKYYGSIFW 529
           A  +  YG   W
Sbjct: 526 AIGINLYGWYIW 537


>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 212 TRYWFFTNIYKRFSKSNAEVRS 277
           +R+W+F ++ +R  K+N E+ S
Sbjct: 45  SRFWYFVSMLRRVKKANGEILS 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,470
Number of Sequences: 27780
Number of extensions: 319191
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)