Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c15
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415...    29   4.8  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    28   6.4  
11_06_0059 + 19691588-19691697,19692281-19692348,19692400-196925...    28   8.4  
03_06_0196 + 32260357-32260785                                         28   8.4  

>07_03_1405 +
           26340645-26340921,26341003-26341226,26341315-26341562,
           26341622-26342051,26342630-26343049
          Length = 532

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 399 TAYGGSVLSFMLETVGKTVVLTGAQVPIFQP-RSDGNNNLLCAVLIAAT 542
           T  GG++L+F + T+ +   + GA   +F P R DG    +  +L  +T
Sbjct: 425 TVPGGTMLTFPIATMHRDEEVWGADAGVFDPMRFDGGGGAMAKLLSFST 473


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
 Frame = +3

Query: 150 RKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILY-QIYEYDELK----------D 296
           R++ +  DD YW+    GT     L LP         L+ +I++Y+E K           
Sbjct: 302 RRIIRSDDDCYWQWEPCGTVDSASLLLPAADSCVPDCLFPEIFDYEERKLALNNVLSSFP 361

Query: 297 SSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 413
           + D   DD + M   IK    D DG+++   T++    G
Sbjct: 362 TLDLYRDDVVYMMTKIKD--DDPDGWIIAVNTESKRLEG 398


>11_06_0059 +
           19691588-19691697,19692281-19692348,19692400-19692579,
           19693267-19693573,19694079-19694559
          Length = 381

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/80 (21%), Positives = 38/80 (47%)
 Frame = +3

Query: 258 ILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGGSVLSFMLE 437
           ++ Q+   D    SS  +  ++  +A    + +HD+D   + HG  +++  GS++     
Sbjct: 230 VVDQLSPMDSFDFSSTQSSPNYDNVALSPLKLHHDHDESYIGHGAGSSSEKGSMMYESRL 289

Query: 438 TVGKTVVLTGAQVPIFQPRS 497
           TV K  +  G    +F+ ++
Sbjct: 290 TVSKETLDDGPLGEVFKRKN 309


>03_06_0196 + 32260357-32260785
          Length = 142

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 195 LAGTDKKDYLALPDGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARD 341
           L+G+D  D + L DG ++   ++++  E  +  +S+   +D  I  A+D
Sbjct: 7   LSGSDGGDSVELHDGSESSFAVVHENAEISDATESNYDHVDSKIAAAKD 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,752,935
Number of Sequences: 37544
Number of extensions: 451257
Number of successful extensions: 1162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)