Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c15
         (711 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035836-1|AAH35836.1|  439|Homo sapiens LOC374569 protein protein.   187   4e-47
BC071596-1|AAH71596.1| 1287|Homo sapiens RAB6 interacting protei...    33   1.3  
AB029014-1|BAA83043.1| 1359|Homo sapiens KIAA1091 protein protein.     33   1.3  
BC065277-1|AAH65277.1|  240|Homo sapiens thioesterase superfamil...    30   9.4  
BC024187-1|AAH24187.1|  779|Homo sapiens DEAH (Asp-Glu-Ala-His) ...    30   9.4  
AL450992-3|CAI12162.1|  240|Homo sapiens thioesterase superfamil...    30   9.4  
AJ313515-1|CAC86384.1|  240|Homo sapiens C-terminal modulator pr...    30   9.4  
AF461690-1|AAN77932.1|  779|Homo sapiens DEAD-box containing hel...    30   9.4  
AF260270-1|AAF70326.1|  714|Homo sapiens PAD protein.                  30   9.4  

>BC035836-1|AAH35836.1|  439|Homo sapiens LOC374569 protein protein.
          Length = 439

 Score =  187 bits (455), Expect = 4e-47
 Identities = 100/216 (46%), Positives = 135/216 (62%)
 Frame = +3

Query: 54  KRVLVLYTGGTFGMLKNEKGVLVPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALP 233
           +R+L +YTGGT GM ++E GVLVP   + +++R LP  HD+ + +   A    +D L LP
Sbjct: 9   RRLLAVYTGGTIGM-RSELGVLVPGTGLAAILRTLPMFHDEEHAR---ARGLSEDTLVLP 64

Query: 234 DGKDTDVKILYQIYEYDELKDSSDFTIDDWIKMARDIKRFYHDYDGFVVLHGTDTTAYGG 413
                  +ILY + E   L DSSD TI +W+ +A+ IKR Y  Y GFVV+HGTDT A+  
Sbjct: 65  PASRNQ-RILYTVLECQPLFDSSDMTIAEWVCLAQTIKRHYEQYHGFVVIHGTDTMAFAA 123

Query: 414 SVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPEVTVFFGAKLFRG 593
           S+LSFMLE + KTV+LTGAQVPI    SDG  NLL A+L+A    IPEV +FF  +LFRG
Sbjct: 124 SMLSFMLENLQKTVILTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQNQLFRG 183

Query: 594 TRVKKVSNTRIYAFDTPNFPPLLEAKTTLEVDPKML 701
            R  KV   R  AF +PN  PL      + ++ +++
Sbjct: 184 NRATKVDARRFAAFCSPNLLPLATVGADITINRELV 219


>BC071596-1|AAH71596.1| 1287|Homo sapiens RAB6 interacting protein 1
           protein.
          Length = 1287

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 120 VPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILYQIYEYDELKDS 299
           V  K I S ++ L  +H+  Y   +    D +D  ++ DG+DT V  L +   YD  +D+
Sbjct: 141 VTSKQICSAMQTLYHMHNAEYDVLHAPPADDRDQSSMEDGEDTPVTKLQRFNSYDISRDT 200


>AB029014-1|BAA83043.1| 1359|Homo sapiens KIAA1091 protein protein.
          Length = 1359

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 120 VPQKDIESVIRKLPQLHDDAYWKNNLAGTDKKDYLALPDGKDTDVKILYQIYEYDELKDS 299
           V  K I S ++ L  +H+  Y   +    D +D  ++ DG+DT V  L +   YD  +D+
Sbjct: 213 VTSKQICSAMQTLYHMHNAEYDVLHAPPADDRDQSSMEDGEDTPVTKLQRFNSYDISRDT 272


>BC065277-1|AAH65277.1|  240|Homo sapiens thioesterase superfamily
           member 4 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
 Frame = +3

Query: 318 DWIKMARDI-KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPR 494
           +++    DI KR    + G   L G     +GG++ + +  TVG   ++ G  V      
Sbjct: 122 EYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANLN 181

Query: 495 SDGNNNL-LCAVLIAATQRIPEVTVFFGAKLFRGTRVKKVSNTRIYAFDTPNFPPLLEAK 671
            +    + LC+V++  +Q + +V    G K F    V+ V    +Y+  T  F  L  AK
Sbjct: 182 INYKRPIPLCSVVMINSQ-LDKVE---GRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAK 237

Query: 672 T 674
           +
Sbjct: 238 S 238


>BC024187-1|AAH24187.1|  779|Homo sapiens DEAH (Asp-Glu-Ala-His) box
           polypeptide 40 protein.
          Length = 779

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 378 VLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPE 557
           +L   + T +   +L    E    T +L G    +FQ +S      L  V+++AT  + +
Sbjct: 158 ILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK 217

Query: 558 VTVFFG 575
           ++ FFG
Sbjct: 218 LSAFFG 223


>AL450992-3|CAI12162.1|  240|Homo sapiens thioesterase superfamily
           member 4 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
 Frame = +3

Query: 318 DWIKMARDI-KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPR 494
           +++    DI KR    + G   L G     +GG++ + +  TVG   ++ G  V      
Sbjct: 122 EYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANLN 181

Query: 495 SDGNNNL-LCAVLIAATQRIPEVTVFFGAKLFRGTRVKKVSNTRIYAFDTPNFPPLLEAK 671
            +    + LC+V++  +Q + +V    G K F    V+ V    +Y+  T  F  L  AK
Sbjct: 182 INYKRPIPLCSVVMINSQ-LDKVE---GRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAK 237

Query: 672 T 674
           +
Sbjct: 238 S 238


>AJ313515-1|CAC86384.1|  240|Homo sapiens C-terminal modulator
           protein protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
 Frame = +3

Query: 318 DWIKMARDI-KRFYHDYDGFVVLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPR 494
           +++    DI KR    + G   L G     +GG++ + +  TVG   ++ G  V      
Sbjct: 122 EYVMFYNDIEKRMVCLFQGGPYLEGPPGFIHGGAIATMIDATVGMCAMMAGGIVMTANLN 181

Query: 495 SDGNNNL-LCAVLIAATQRIPEVTVFFGAKLFRGTRVKKVSNTRIYAFDTPNFPPLLEAK 671
            +    + LC+V++  +Q + +V    G K F    V+ V    +Y+  T  F  L  AK
Sbjct: 182 INYKRPIPLCSVVMINSQ-LDKVE---GRKFFVSCNVQSVDEKTLYSEATSLFIKLNPAK 237

Query: 672 T 674
           +
Sbjct: 238 S 238


>AF461690-1|AAN77932.1|  779|Homo sapiens DEAD-box containing
           helicase-like protein protein.
          Length = 779

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 378 VLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPE 557
           +L   + T +   +L    E    T +L G    +FQ +S      L  V+++AT  + +
Sbjct: 158 ILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK 217

Query: 558 VTVFFG 575
           ++ FFG
Sbjct: 218 LSAFFG 223


>AF260270-1|AAF70326.1|  714|Homo sapiens PAD protein.
          Length = 714

 Score = 29.9 bits (64), Expect = 9.4
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +3

Query: 378 VLHGTDTTAYGGSVLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAATQRIPE 557
           +L   + T +   +L    E    T +L G    +FQ +S      L  V+++AT  + +
Sbjct: 59  ILGDPNLTKFSVIILDEAHERTLTTDILFGLLKKLFQEKSPNRKEHLKVVVMSATMELAK 118

Query: 558 VTVFFG 575
           ++ FFG
Sbjct: 119 LSAFFG 124


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,643,706
Number of Sequences: 237096
Number of extensions: 2402323
Number of successful extensions: 4942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4940
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)