Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c12
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permeas...    29   3.4  
AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion transpo...    29   3.4  
AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion transpo...    29   3.4  
Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>U67954-8|AAB52608.2|  782|Caenorhabditis elegans Sulfate permease
           family protein 3 protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 447 LKSSLESVQCTGIRCFSICSKT-LQKLVNSTNRYQL 551
           LKS    +Q  GI+CF +  K+ L+KL  +T+ Y++
Sbjct: 648 LKSVYVDLQAAGIQCFFVVQKSDLKKLFRATDFYEV 683


>AY954524-1|AAX34432.2|  762|Caenorhabditis elegans anion
           transporter SULP-3b protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 447 LKSSLESVQCTGIRCFSICSKT-LQKLVNSTNRYQL 551
           LKS    +Q  GI+CF +  K+ L+KL  +T+ Y++
Sbjct: 628 LKSVYVDLQAAGIQCFFVVQKSDLKKLFRATDFYEV 663


>AY887909-1|AAX34421.1|  782|Caenorhabditis elegans anion
           transporter SULP-3a protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 447 LKSSLESVQCTGIRCFSICSKT-LQKLVNSTNRYQL 551
           LKS    +Q  GI+CF +  K+ L+KL  +T+ Y++
Sbjct: 648 LKSVYVDLQAAGIQCFFVVQKSDLKKLFRATDFYEV 683


>Z73974-8|CAA98274.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 371 YPDTVLMILSKFPLEIEVWNDDENEVEIFVGIGTMHWDTMFFHMLKDTA 517
           Y DT+  ++  FP    +W  + N VE    +   H    FF  +  TA
Sbjct: 315 YKDTIAQVVRSFPSVTFIWKYENNNVEFAENLPNFH----FFKWVPQTA 359


>Z73905-7|CAA98112.2|  526|Caenorhabditis elegans Hypothetical
           protein F29F11.2 protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 371 YPDTVLMILSKFPLEIEVWNDDENEVEIFVGIGTMHWDTMFFHMLKDTA 517
           Y DT+  ++  FP    +W  + N VE    +   H    FF  +  TA
Sbjct: 315 YKDTIAQVVRSFPSVTFIWKYENNNVEFAENLPNFH----FFKWVPQTA 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,435
Number of Sequences: 27780
Number of extensions: 393024
Number of successful extensions: 1147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)