Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c12
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              28   0.078
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.73 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 0.078
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 326 WSRTIRVGKSYLFPSYP--DTVLMILSKFPLEIEVWNDDENEVEIF 457
           W R I V   Y++ S P  D VL+I     + ++V   D+N V+++
Sbjct: 551 WGRAINVANRYVYASQPDKDRVLVISEIQMVIVDVIPTDKNPVQLW 596


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 555 CLIDNGSWSLQASAVSLSIWKN 490
           C++  GSW+     VSL+++ N
Sbjct: 165 CIMKFGSWTFNGDQVSLALYNN 186


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 386 LMILSKFPLEIEVWNDDENEVEIFVGI 466
           +++L K  LE+E WN   + V I   I
Sbjct: 517 MLVLPKLTLEVEEWNPLTDTVPIHTWI 543


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 469 TDSNEDFNLIFIVVPNLNL 413
           TD+N  + LI ++VP L L
Sbjct: 183 TDANSWWALILVIVPCLTL 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,958
Number of Sequences: 438
Number of extensions: 4958
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)