Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c11
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365... 52 5e-07
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 44 1e-04
06_03_0822 + 25006380-25006544,25006616-25006747,25006886-250069... 38 0.007
01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624... 30 2.3
01_01_0944 + 7437536-7437652,7438468-7438704 29 3.1
10_01_0262 + 2752044-2752079,2752880-2753167,2753198-2753551 29 5.3
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 29 5.3
03_01_0537 + 4029790-4029827,4030048-4030171,4030491-4030754,403... 29 5.3
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 28 7.1
08_02_0530 + 18244933-18245217,18245309-18245383,18246176-182462... 28 7.1
>03_01_0475 +
3656628-3656791,3656944-3657013,3657114-3657310,
3657409-3657484,3657794-3657877,3658247-3658326,
3658422-3658548,3658727-3658786,3658874-3658924,
3659013-3659171,3659296-3659428,3659545-3659717
Length = 457
Score = 52.0 bits (119), Expect = 5e-07
Identities = 29/103 (28%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Frame = +2
Query: 386 SCLSLGSCLWI----ALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQ 553
S L++G+ LW+ A+ + P +Y +A +IGA +++ +V+++ + + L+G +
Sbjct: 314 SLLTIGAILWVIAGAAVFVLPSQMHNLMYPLAMVIGAANALVMVTTIGLESALVGDDLNG 373
Query: 554 SAAIYSIVTFADKLVTGIAVVAIQNYKCDDVVDCPQYYRGVLT 682
A +Y ++F DK+ GIA+ +++Y +D + C + RG+ T
Sbjct: 374 CAFVYGSLSFLDKMSCGIALFVLESY--EDSISCGE-TRGLYT 413
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +2
Query: 395 SLGSCLWI----ALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQSAA 562
S G+ LWI + + P +Y ++ IG +++ V+S+ + L+G + A
Sbjct: 282 SAGAMLWILSGVGIVVLPSGMHNFMYALSITIGVANALMTVTSISMEGILVGEDLNGCAF 341
Query: 563 IYSIVTFADKLVTGIAVVAIQNYKCDDV 646
+Y ++F DK+ G+A+ +++Y+ D V
Sbjct: 342 VYGSLSFVDKVSCGLALYILESYQDDTV 369
>06_03_0822 +
25006380-25006544,25006616-25006747,25006886-25006922,
25007050-25007093,25007878-25007988
Length = 162
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/74 (25%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Frame = +2
Query: 386 SCLSLGSCLWI----ALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQ 553
S L++G+ LW+ A+ + P IY +A +IGA +++ +++++ + + L+G +
Sbjct: 13 SLLTIGAILWVIAGAAVFVLPSQMHNLIYPLAVVIGAANTLVMLTTIGLESALVGDDLNG 72
Query: 554 SAAIYSIVTFADKL 595
+Y ++F DK+
Sbjct: 73 CTFVYGSLSFLDKI 86
>01_01_0802 +
6246267-6247541,6247625-6247682,6247806-6248129,
6248321-6248355
Length = 563
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -3
Query: 332 VARKRTMKCKAQEVHSQLALILHSGSQINV 243
+ R++ M+ + Q VH Q+AL+LHS + N+
Sbjct: 520 IYREKHMQIQTQIVHQQMALMLHSHPERNI 549
>01_01_0944 + 7437536-7437652,7438468-7438704
Length = 117
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 409 PVDCISHRSGSEHSSNLHGRNTHWGRKLNHARLQPMCHSRSHRAALTPKCCHLFYSD 579
PVD S+H + + H K H +P C+S+S L PK H +YS+
Sbjct: 35 PVDGKMRDKPSKHLLSQNRFGVHGELKFQHRNRRPDCYSQSPYLVLDPK-EHQYYSN 90
>10_01_0262 + 2752044-2752079,2752880-2753167,2753198-2753551
Length = 225
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 440 ASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQSAA 562
A +VQI + AGS T SS A+L GP HQ ++
Sbjct: 2 APVVQINVHIQFDEAGSRTTATSSWVAAAELEGPGRHQGSS 42
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +2
Query: 410 LWIAL--AIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGPHSHQSAAIYSIVTF 583
LW +L A A VQ+ + + +TL++ L A L H+ + A Y T
Sbjct: 169 LWNSLLHAYLSRAHYVQVLRLFRTMRTADHVTLLALLSACAHLGALHTARWAHAYLATTC 228
Query: 584 ADKLVTGIAVVAIQNY-KCDDV 646
+ + T +A + Y +C DV
Sbjct: 229 SFPITTNLATALLNMYMRCGDV 250
>03_01_0537 +
4029790-4029827,4030048-4030171,4030491-4030754,
4030847-4030978,4031068-4031184,4031687-4031963,
4037100-4037137
Length = 329
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 249 KRSSKNNGTYTRLNAQYRRENT----YPPKNNRLRKK 151
++ + NG TR NA RR + YPPK N+ +KK
Sbjct: 280 EKELQKNGQPTRTNAAKRRADAQILLYPPKPNKSKKK 316
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 579 HLQTNLLRV*LSSLFRTINAMMLWIVLNIIEGCSRTHAAEVPHLAYCXCLSLN*F 743
+ TN++ +S+ + AM+ W++L+ CS + A P A C S N F
Sbjct: 136 YFDTNMVTKGISNTPEALPAMLNWLILSNSSACSASTNASAPSSA-PECCSANSF 189
>08_02_0530 +
18244933-18245217,18245309-18245383,18246176-18246292,
18246503-18246631,18246726-18246785,18247271-18247441,
18247596-18247689,18247860-18247951,18248071-18248220,
18248407-18248465,18249735-18249864
Length = 453
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 181 ICIFSSVLGIESCVRAIVLGGTFICEPEC 267
I I S SC R ++LG IC P+C
Sbjct: 158 IYILSDFRCSPSCTRGVILGSEPICPPDC 186
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,610
Number of Sequences: 37544
Number of extensions: 421675
Number of successful extensions: 1037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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