Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c11
         (763 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068439-1|AAH68439.1|  480|Homo sapiens chromosome 19 open read...    87   9e-17
BC036706-1|AAH36706.1|  471|Homo sapiens C19orf28 protein protein.     87   9e-17

>BC068439-1|AAH68439.1|  480|Homo sapiens chromosome 19 open reading
           frame 28 protein.
          Length = 480

 Score = 86.6 bits (205), Expect = 9e-17
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
 Frame = +2

Query: 182 YVFSRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXXXG 361
           Y+ +RL   LS  Y+ ++L   L +      + +A++P                     G
Sbjct: 284 YMTTRLIVNLSQTYMAMYLTYSLHLP----KKFIATIPLVMYLSGFLSSFLMKPINKCIG 339

Query: 362 NQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGP 541
             + YF G  + L    W+ALA   E   V +Y  A L+GAG +  LV+SL +TADLIGP
Sbjct: 340 RNMTYFSGLLVILAFAAWVALA---EGLGVAVYAAAVLLGAGCATILVTSLAMTADLIGP 396

Query: 542 HSHQSAAIYSIVTFADKLVTGIAVVAIQN-YKCDDVVDC 655
           H++  A +Y  ++F DK+  G+AV+AIQ+ + C   + C
Sbjct: 397 HTNSGAFVYGSMSFLDKVANGLAVMAIQSLHPCPSELCC 435


>BC036706-1|AAH36706.1|  471|Homo sapiens C19orf28 protein protein.
          Length = 471

 Score = 86.6 bits (205), Expect = 9e-17
 Identities = 52/159 (32%), Positives = 81/159 (50%), Gaps = 1/159 (0%)
 Frame = +2

Query: 182 YVFSRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXXXG 361
           Y+ +RL   LS  Y+ ++L   L +      + +A++P                     G
Sbjct: 275 YMTTRLIVNLSQTYMAMYLTYSLHLP----KKFIATIPLVMYLSGFLSSFLMKPINKCIG 330

Query: 362 NQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIGP 541
             + YF G  + L    W+ALA   E   V +Y  A L+GAG +  LV+SL +TADLIGP
Sbjct: 331 RNMTYFSGLLVILAFAAWVALA---EGLGVAVYAAAVLLGAGCATILVTSLAMTADLIGP 387

Query: 542 HSHQSAAIYSIVTFADKLVTGIAVVAIQN-YKCDDVVDC 655
           H++  A +Y  ++F DK+  G+AV+AIQ+ + C   + C
Sbjct: 388 HTNSGAFVYGSMSFLDKVANGLAVMAIQSLHPCPSELCC 426


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,890,401
Number of Sequences: 237096
Number of extensions: 2438388
Number of successful extensions: 4514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4512
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)