Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c11
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    54   8e-08
U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q (ub...    29   3.6  
U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q (ub...    29   3.6  
U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q (ubi...    29   3.6  
U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q (ubi...    29   3.6  
U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q (ubi...    29   3.6  
AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical ...    28   8.3  
AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 1/149 (0%)
 Frame = +2

Query: 182 YVFSRLYWALSLVYVPLFLEERLSVNPSAGSELVASVPXXXXXXXXXXXXXXXXXXXXX- 358
           Y+ SRLY  +S VY P ++    ++  +   + VA +P                      
Sbjct: 288 YMLSRLYINISQVYFPFYI----TMTQNYEKKYVAILPMVAYLSSFSVSMVNSLPVVSKL 343

Query: 359 GNQVVYFIGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADLIG 538
             +++Y  G    + SC  + L +       +IY +A  IG   +I L++SL +TADLI 
Sbjct: 344 SKKILYSFGLASGMLSCAVMMLDLPGW----KIYALAVGIGIAQAILLITSLSITADLIN 399

Query: 539 PHSHQSAAIYSIVTFADKLVTGIAVVAIQ 625
            ++   A +Y  ++F DKL  GIA   I+
Sbjct: 400 KNTESGAFVYGAMSFFDKLSNGIAYQLIE 428


>U13876-11|AAN63395.1|  201|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform d protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 380 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 532
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  DL
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123


>U13876-10|AAN63394.1|  216|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform c protein.
          Length = 216

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 380 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 532
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  DL
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123


>U13876-9|AAW88395.1|  356|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform a protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 380 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 532
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  DL
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123


>U13876-8|AAN63396.1|  370|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform e protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 380 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 532
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  DL
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123


>U13876-7|AAW88396.1|  427|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 2, isoform b protein.
          Length = 427

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 380 IGSCLSLGSCLWIALAIDPEASIVQIYMVATLIGAGSSITLVSSLCVTADL 532
           IG+ L    C W      P   +  IYM+ +L GAG+ + + S+ CV  DL
Sbjct: 75  IGTWLLYWPCTWSIAMATPAGQLPSIYML-SLFGAGAFL-MRSAGCVINDL 123


>AF039052-7|AAO91672.2|  462|Caenorhabditis elegans Hypothetical
           protein T22D1.3b protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 509 SLCVTADLIGPHSHQSAAIYSIVTFADKLVTGIAVVA 619
           S+C+T D++     Q  A+Y +  +A++   GI +VA
Sbjct: 347 SICITQDVMAVGRAQGTAVYDVARYANQ--RGIPIVA 381


>AF039052-6|AAF98635.2|  534|Caenorhabditis elegans Hypothetical
           protein T22D1.3a protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 509 SLCVTADLIGPHSHQSAAIYSIVTFADKLVTGIAVVA 619
           S+C+T D++     Q  A+Y +  +A++   GI +VA
Sbjct: 347 SICITQDVMAVGRAQGTAVYDVARYANQ--RGIPIVA 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,768
Number of Sequences: 27780
Number of extensions: 385374
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)