Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c08
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.29
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 1.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.7
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 27 2.7
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 2.7
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 3.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.8
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 26 8.4
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 26 8.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 8.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 8.4
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c... 26 8.4
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.29
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -2
Query: 664 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDH--RSRLTALPGPTARNFTGSSRRN 491
S S P+T+ + S + SS S +S S ++ PT+ + T SS +
Sbjct: 236 STSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSS 295
Query: 490 SSSQPTTGSSTL 455
SSS PT+ SST+
Sbjct: 296 SSSSPTSTSSTI 307
Score = 29.5 bits (63), Expect = 0.68
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 414 TTGDTHAAFKLSLDS-PQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISARTT 256
++ T + LS S P TSSS+ T ++ S S ASSS+ +IS+ ++
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS 278
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 28.3 bits (60), Expect = 1.6
Identities = 28/105 (26%), Positives = 43/105 (40%)
Frame = -3
Query: 534 LVLRHATSLAHHAATVHRSPRPDHQRLGSHXSGVAALHTWTTGDTHAAFKLSLDSPQTSS 355
L+ R TS ++ ++ S S + ++L + +T T +A S S TSS
Sbjct: 55 LLKRATTSYNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTS--SSLTSS 112
Query: 354 STGDTHAAFKLSLDSPQASSSTGPCKLISARTTLIKKKKNDTTFS 220
S + A + S ASSS L S+ T + TT S
Sbjct: 113 SATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSS 157
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/97 (26%), Positives = 42/97 (43%)
Frame = -2
Query: 664 SASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRRNSS 485
S+S T TT P+ S SS S +S S ++ ++ + + SS +SS
Sbjct: 145 SSSSTTTTTSPSSS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 484 SQPTTGSSTLGVTHXRRGSSAHMDYWRHARSIQAQSR 374
S ++ SS+ V SS+H + S + SR
Sbjct: 197 SSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSR 233
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/66 (30%), Positives = 26/66 (39%)
Frame = -2
Query: 538 LPGPTARNFTGSSRRNSSSQPTTGSSTLGVTHXRRGSSAHMDYWRHARSIQAQSRLTADF 359
LP P+A T S N SS T S + H S + RH R + ++R
Sbjct: 91 LPQPSALALTSSKAANRSSTNTEKDSR-SIAHSTSRSRSTSPANRHRRKEKERTRSNHRH 149
Query: 358 EQHWRH 341
H RH
Sbjct: 150 GSHRRH 155
>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
Stt3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 752
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/43 (20%), Positives = 20/43 (46%)
Frame = -3
Query: 594 PTASQHRSLNRTIAADSPRFLVLRHATSLAHHAATVHRSPRPD 466
P R+ N+ + + P+ + A + HH +++ +PD
Sbjct: 677 PNQGYDRARNQKLPSKDPQLFTIEEAFTTVHHLVRLYKVKKPD 719
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/73 (23%), Positives = 31/73 (42%)
Frame = -3
Query: 510 LAHHAATVHRSPRPDHQRLGSHXSGVAALHTWTTGDTHAAFKLSLDSPQTSSSTGDTHAA 331
L H +HR+P+P +R + +L + T+ A K + PQ S +
Sbjct: 120 LLRHQQKIHRNPQPRRRRRSTTALPNPSLSNVSVSTTNLASKPVISLPQADSIDKFRYPK 179
Query: 330 FKLSLDSPQASSS 292
+L + A++S
Sbjct: 180 LHAALQAQLANNS 192
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 641 HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 534
H P + DK+ VP +A++ + G S+P AS
Sbjct: 65 HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/79 (27%), Positives = 33/79 (41%)
Frame = -2
Query: 652 TPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRRNSSSQPT 473
T +T+ + I SS S P + + T++P P T S+ NSS PT
Sbjct: 167 TTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS--TSSTDTNSSPLPT 224
Query: 472 TGSSTLGVTHXRRGSSAHM 416
T +S T G S+ +
Sbjct: 225 TSTSCTTSTSIPTGGSSSL 243
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 8.4
Identities = 21/85 (24%), Positives = 36/85 (42%)
Frame = -2
Query: 670 IFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRRN 491
+ S+ T +P S +RH S+ +KPA+ + + LP + SR N
Sbjct: 96 VVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAA-VSPNPAAHHAELPSGSVPPSASVSRAN 154
Query: 490 SSSQPTTGSSTLGVTHXRRGSSAHM 416
S++ TT GV ++ H+
Sbjct: 155 STA--TTTPHKAGVVSNPAAANVHV 177
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 8.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 612 HVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSLAHHAATVHRSPR 472
H+ D P S R+ +RT++ S +L +RH + H++PR
Sbjct: 230 HMYD--PYTSPLRTPSRTLSRSSSHYLWVRHGKLTRSVSLLQHKTPR 274
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 617 KSTSLTVVPQQASIAASTG-PSQPTHRASWSYGTQLHW 507
KST + V P+Q S A+ G S P+ +S S T+ W
Sbjct: 651 KSTQVPVTPKQKSSTANKGSTSSPSPPSSESKKTKRSW 688
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/60 (28%), Positives = 22/60 (36%)
Frame = -2
Query: 379 SRLTADFEQHWRHARSIQAQPRLTAGFEQHWPLQANLSTDNANXXXXX*HDLQSRRGVMW 200
S L + FE AR PR FEQH + +D + H Q R + W
Sbjct: 385 SSLKSFFEHAAEAARKCNLDPRALESFEQH------MLSDRLHDPVVLFHYFQIRNSICW 438
>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 8.4
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = -3
Query: 672 SSSAHQELRLPQSPHSRR*KHVIDSRPTASQHRSLNRTIAADSPRFLVLRHATSL 508
S + + S S + K I+ A H++ NRT DSP +V T L
Sbjct: 295 SHQPYHYTNVKDSQGSHQTKVTIEENMEAPSHQAANRTTLTDSPLGIVEDETTIL 349
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,460,861
Number of Sequences: 5004
Number of extensions: 69947
Number of successful extensions: 303
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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