Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c08
(896 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617 32 0.54
09_04_0489 - 18031187-18031579,18032033-18034030,18034102-180342... 32 0.71
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 31 1.2
07_01_0827 - 6664723-6665346,6666636-6667559 30 2.2
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 30 2.2
10_08_0439 - 17926021-17927133 30 2.9
11_03_0047 - 9311913-9312659 29 3.8
02_03_0344 + 17967687-17968309,17968402-17968744,17970285-179704... 29 3.8
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397... 29 5.0
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416... 29 5.0
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 6.6
03_01_0168 + 1382531-1383931,1384028-1384150 28 8.8
02_03_0345 + 17973509-17974131,17974207-17974537,17974624-179749... 28 8.8
02_02_0186 + 7594197-7594281,7594409-7594513,7595062-7595238,759... 28 8.8
>01_06_0184 - 27282021-27282313,27284238-27285374,27285524-27285617
Length = 507
Score = 32.3 bits (70), Expect = 0.54
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 583 PASQPQQDHRSRLTALPGPTARNFTGSSRRNSSSQPTTGSST 458
PA QP Q + ++ + PT+ + + S R + SS+P +ST
Sbjct: 143 PAPQPVQPQQQLVSPVAAPTSSSSSSSDRSSGSSKPARATST 184
>09_04_0489 -
18031187-18031579,18032033-18034030,18034102-18034234,
18035360-18036108
Length = 1090
Score = 31.9 bits (69), Expect = 0.71
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 716 PQTGDPDGNNRSFLIHLQRI---KNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQPT 546
P D D NR HLQR+ ++ + +P +A + T++ + A + PS PT
Sbjct: 88 PAPADEDSENRLIAFHLQRLFAGEDPSFASPPQIAPQPQPQTLITPAIAAAVTPAPSLPT 147
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 31.1 bits (67), Expect = 1.2
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = -2
Query: 694 ETIAAF*FIFSASRTPATTIPAFSQIKARH*Q--SSHSKPASQPQQDHRSRLTALPGPTA 521
E A +I P +P S+I AR + S+ A D SRL LP
Sbjct: 609 EARLAIEYIVIPGGEPVELLPRCSEIVARQLELVESYQLLAETFGTDSNSRLQILPVKIT 668
Query: 520 RNFTGSSRRNSSSQPTTGSSTLGVTHXRRGSS 425
+ SS+ ++ S P GSS L V+ GSS
Sbjct: 669 KK--SSSKGSAGSMPKQGSSDLIVSDNGGGSS 698
>07_01_0827 - 6664723-6665346,6666636-6667559
Length = 515
Score = 30.3 bits (65), Expect = 2.2
Identities = 24/96 (25%), Positives = 35/96 (36%)
Frame = -2
Query: 592 HSKPASQPQQDHRSRLTALPGPTARNFTGSSRRNSSSQPTTGSSTLGVTHXRRGSSAHMD 413
H P+S+ RL GP + + G +S P L + + HM
Sbjct: 51 HFVPSSESVHGAMRRLAREHGPVMQLWFGEVPTVVASSPEAAQEVLR-SKDMAFADRHMT 109
Query: 412 YWRHARSIQAQSRLTADFEQHWRHARSIQAQPRLTA 305
A S + A + + WRH R + Q LTA
Sbjct: 110 SATAAFSFGGRDVALAPYGERWRHLRRLLTQELLTA 145
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 435 VAALHTWTTGDTHAAFK-LSLDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISART 259
VAA+ WT G+ ++ K L +D S A FK + P +++ +G K + T
Sbjct: 189 VAAMLRWTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAE-PNSNNKSGSTKWDLSAT 247
Query: 258 TLIKKKK 238
+K+K+
Sbjct: 248 ITVKQKR 254
>10_08_0439 - 17926021-17927133
Length = 370
Score = 29.9 bits (64), Expect = 2.9
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -2
Query: 700 PTETIAAF*FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGP 527
P I F F F AT+ A + A QSS S A+ P D + L ++ GP
Sbjct: 53 PAPAIIPFPFAFPPMMPTATSASAAAAAAASPTQSSSSSAATSPSSDLSAFLNSMLGP 110
>11_03_0047 - 9311913-9312659
Length = 248
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -2
Query: 556 RSRLTALPGPTARNFTGSSRRNSSSQPTTGSSTLGVTHXRRGSSAHMDYWRHARSIQAQS 377
R ++ P P T SS +S S PTTGS G+ H + A+M A + Q+
Sbjct: 44 RELASSSPEPCRGLITSSSSSSSPSSPTTGSFCDGIDH--KSLRANM-----AAPVAEQA 96
Query: 376 RLTAD 362
R+ AD
Sbjct: 97 RVLAD 101
>02_03_0344 +
17967687-17968309,17968402-17968744,17970285-17970410,
17970458-17970642,17970721-17970973
Length = 509
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 433 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSIQAQPR 314
G++++ YWRH R + L+A QH+ H R +A R
Sbjct: 122 GTASYGPYWRHVRRVAVTEILSARRVQHFADVHVREARAMAR 163
>05_06_0202 -
26339467-26339494,26339579-26339624,26339742-26339785,
26340729-26340851,26341010-26341124,26341447-26342207,
26342305-26342711,26342798-26342900,26344642-26345144
Length = 709
Score = 29.1 bits (62), Expect = 5.0
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Frame = -3
Query: 594 PTASQHRSLNRTIAADSPRFLVLRHATSLAHHAATVHRSPRPDHQRLGSHXSGVAALHTW 415
P+ H+ L + D RH +S H SP P + G G A + +
Sbjct: 386 PSRPSHQELPVSQRGDGQPSTTTRHFSS---PIGMEHVSPTPQY---GPLLRGKAFVPSA 439
Query: 414 TTGDTHAAFKLS-LDSPQTSSSTGDTHAAFKLSLDSPQASSSTGPCKLISAR 262
G HA + +D P SST + + F ++ + +S+ P ++ R
Sbjct: 440 GHGKLHAEVPIKGMDHPSFHSSTSSSTSQFPIATNQVTGNSAKSPHPIVQQR 491
>03_02_0693 -
10441253-10441294,10441404-10441511,10441594-10441677,
10441765-10443062,10443111-10444804,10444890-10444957,
10445057-10445186,10445292-10445415,10445551-10445711,
10446714-10446868
Length = 1287
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 598 SSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRRNSS 485
SS PA + DH +P P A+ G R+SS
Sbjct: 398 SSDVVPAEEENNDHHQGYVCVPSPQAKPVAGEHERSSS 435
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 547 LTALPGPTARNFTGSSRRNSSSQPT 473
+ A+PGPT+RN NSSS P+
Sbjct: 510 IPAIPGPTSRNVPMEENSNSSSIPS 534
>03_01_0168 + 1382531-1383931,1384028-1384150
Length = 507
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 502 SRRNSSSQPTTGSSTLGVTHXRRGSSAHMDYWRHAR 395
+RRN SS P+ ++ G+ H G +A + W+ R
Sbjct: 67 NRRNDSSPPSDDAAPTGLGHIVFGIAASSELWKSRR 102
>02_03_0345 +
17973509-17974131,17974207-17974537,17974624-17974985,
17975314-17975572
Length = 524
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 433 GSSAHMDYWRHARSIQAQSRLTADFEQHWR--HARSIQAQPR 314
G++++ YWRH R I L+A QH+ + R ++A R
Sbjct: 123 GTASYGPYWRHIRRIAVTELLSAHRVQHFADVNVREVRALAR 164
>02_02_0186 +
7594197-7594281,7594409-7594513,7595062-7595238,
7595716-7595886,7596198-7596289,7596302-7596407,
7597516-7597601,7597861-7598501,7599065-7599107
Length = 501
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/93 (20%), Positives = 34/93 (36%)
Frame = -2
Query: 601 QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRRNSSSQPTTGSSTLGVTHXRRGSSA 422
+ + P +Q R L GP N T + S STL H
Sbjct: 356 EDTEETPVAQKLSSTPMRPETLHGPNPVNETAPKAQKSVKSSKFRDSTLSSKHRSSKRQE 415
Query: 421 HMDYWRHARSIQAQSRLTADFEQHWRHARSIQA 323
+ +++ + + Q S++ D +H +S +A
Sbjct: 416 YAEFYGSSETPQVSSKVPKDRLRHRHREKSGEA 448
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,116,991
Number of Sequences: 37544
Number of extensions: 529886
Number of successful extensions: 1812
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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