Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c08
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 33 0.28
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 33 0.28
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 33 0.28
AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical ... 29 3.4
Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 29 4.5
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 29 4.5
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 6.0
Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical ... 28 7.9
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = -2
Query: 673 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRR 494
F + T +T+P+ S + + SS S + P S LT+ P P++ +G+
Sbjct: 450 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 509
Query: 493 NSSSQPTTGSSTLGVTHXRRGSS 425
++ P ST + G++
Sbjct: 510 LTTPSPNPSQSTSSLESSTSGAT 532
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = -2
Query: 673 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRR 494
F + T +T+P+ S + + SS S + P S LT+ P P++ +G+
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
Query: 493 NSSSQPTTGSSTLGVTHXRRGSS 425
++ P ST + G++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGAT 739
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 33.1 bits (72), Expect = 0.28
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = -2
Query: 673 FIFSASRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRR 494
F + T +T+P+ S + + SS S + P S LT+ P P++ +G+
Sbjct: 657 FSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPSPSSTQSSGAQST 716
Query: 493 NSSSQPTTGSSTLGVTHXRRGSS 425
++ P ST + G++
Sbjct: 717 LTTPSPNPSQSTSSLESSTSGAT 739
>AL132904-3|CAB60972.1| 718|Caenorhabditis elegans Hypothetical
protein Y111B2A.3 protein.
Length = 718
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = -2
Query: 577 SQPQQDHRSRLTALPGPTARNFTGSSRRNSSSQPTTGSSTLG 452
S+ DH +R A PG R F G SR NSS+ GSST G
Sbjct: 678 SERNMDHWTR-PASPGN--RPFFGGSRMNSSTSRAHGSSTNG 716
>Z83316-8|CAB54186.1| 409|Caenorhabditis elegans Hypothetical
protein B0379.7 protein.
Length = 409
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = -3
Query: 369 PQTSSSTGDTHAAFKLSLDSPQASS---STGPCKLISARTTLIKKKKN 235
P+ ++S G + +L++DS ASS S+ P S ++ IKKKKN
Sbjct: 176 PKDNTSNGVGGKSERLAVDSGPASSDQSSSAPASTESKKSKKIKKKKN 223
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 593 PQQASIAASTGPSQPTHRASWSYGTQLHWLITPQQFIAAHDRIINAWGHTXPAWQLCT 420
P + +ST S P +S +YG+ + P F + ++WG T P L T
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 72
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = -1
Query: 593 PQQASIAASTGPSQPTHRASWSYGTQLHWLITPQQFIAAHDRIINAWGHTXPAWQLCT 420
P + +ST S P +S +YG+ + P F + ++WG T P L T
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHPPEDLPT 177
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.7 bits (61), Expect = 6.0
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 643 TTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFT-GSSRRNSSSQPTTG 467
TT P S SS ++P + + ++ P PTA + + SS +SS T G
Sbjct: 720 TTQPPASSRSTASQGSSSAQPIASSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVG 779
Query: 466 SSTLGVTHXRRGSS 425
SST+G T SS
Sbjct: 780 SSTMGSTQSSLPSS 793
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = -2
Query: 658 SRTPATTIPAFSQIKARH*QSSHSKPASQPQQDHRSRLTALPGPTARNFTGSSRRNSSSQ 479
S T + + SQ+ + S S S +T P ++R+ +S+ +SS+Q
Sbjct: 682 SSTTSPVASSSSQMTSTQQPSGSSSSIGSTVNQGSSSVTTQPPASSRST--ASQGSSSAQ 739
Query: 478 PTTGSSTLGVT 446
P SST+G T
Sbjct: 740 PIASSSTMGST 750
>Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical
protein T21H8.1b protein.
Length = 962
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Frame = -1
Query: 776 GXPEQYHPLGGKIFLSSLRLPQTGDPD-GNNRSFLIHLQRIKNSG----YHN------PR 630
G P Q HP+GG ++++ Q P R L ++ +G HN PR
Sbjct: 443 GTPRQLHPIGGNQRVNNITSAQYCSPSPPAARQLAAELDELRRNGNEGANHNYSSASLPR 502
Query: 629 ILADKSTSLTVVPQQASIAAST 564
+ S++LT+ ++ S+A+ T
Sbjct: 503 GVGKASSTLTLPSKKLSVASGT 524
>Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical
protein T21H8.1a protein.
Length = 920
Score = 28.3 bits (60), Expect = 7.9
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Frame = -1
Query: 776 GXPEQYHPLGGKIFLSSLRLPQTGDPD-GNNRSFLIHLQRIKNSG----YHN------PR 630
G P Q HP+GG ++++ Q P R L ++ +G HN PR
Sbjct: 443 GTPRQLHPIGGNQRVNNITSAQYCSPSPPAARQLAAELDELRRNGNEGANHNYSSASLPR 502
Query: 629 ILADKSTSLTVVPQQASIAAST 564
+ S++LT+ ++ S+A+ T
Sbjct: 503 GVGKASSTLTLPSKKLSVASGT 524
>AF016684-5|AAB66207.2| 297|Caenorhabditis elegans Hypothetical
protein F45C12.8 protein.
Length = 297
Score = 28.3 bits (60), Expect = 7.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -2
Query: 418 MDYWRHARSIQAQSRLTADFE 356
+D W+ AR+++A S++T FE
Sbjct: 252 LDQWKRARTLRAHSKMTVPFE 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,880,557
Number of Sequences: 27780
Number of extensions: 437282
Number of successful extensions: 1531
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -