Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c08
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.54 
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    25   0.94 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   8.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = -2

Query: 535 PGPTARNFTGSSRRNSSSQPTTGSSTLGVTHXRRGSSAHMDYWRHARS 392
           P P  R  +  S   SSS P  G++  G    R G   +    +  +S
Sbjct: 511 PSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQELKRLKS 558



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 698 DGNNRSFLIH--LQRIKNSGYHNPRILADKSTSLTVVPQQASIAASTGPSQ 552
           DG   + +IH  +    +S   NPRI +  S+S +  P     AA+  PS+
Sbjct: 492 DGAASTAVIHEPVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 504 HHAATVHRSPRPDHQRLGSHXSGVA 430
           HH   VHR  +P++  L S   G A
Sbjct: 26  HHNGVVHRDLKPENLLLASKAKGAA 50


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 16  YYTLGSLNDERKIFHR 63
           + TL SLN+ + I+HR
Sbjct: 411 FRTLNSLNNHKSIYHR 426


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 276 ACKGQCCSKPAVSRG*A*MLRACRQCCSKS 365
           AC+G+C S   VS      +     CC +S
Sbjct: 52  ACRGRCSSYLQVSGSKIWQMERSCMCCQES 81


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 504 HHAATVHRSPRPDHQR 457
           HH    HR  R D++R
Sbjct: 156 HHGMAYHRGHRKDYER 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,086
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)