Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c07
         (288 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200...    27   1.8  
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    27   2.4  
06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024...    27   3.2  
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737...    25   7.4  
12_01_0120 + 912312-912615,913145-913371,913507-913754,914293-91...    25   9.8  
03_06_0191 - 32228642-32228949,32229028-32230567                       25   9.8  

>03_05_0899 -
           28619081-28619208,28619309-28619369,28619936-28620095,
           28620200-28620237,28620341-28620394,28620562-28620636,
           28620744-28620872,28621172-28621259,28621340-28621446,
           28621547-28621595,28621683-28621786,28622019-28622133,
           28622517-28622596
          Length = 395

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = -2

Query: 260 LLNDNQFLEIIVKTIVMIANSNSAKTMTHIKDI 162
           +LN +QFL ++V  + +  N+ S  ++ H+K++
Sbjct: 31  ILNHHQFLFMVVLLVSLSQNAGSLLSILHLKEV 63


>07_03_0715 + 20889399-20890111,20890950-20891060,20891128-20891338,
            20891414-20891474,20891719-20891956,20892046-20892196,
            20892415-20892703,20893464-20894207,20894720-20894851,
            20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 136  H*RVKFCLSISLMCVIVFAEFELAIITIVLTIISRN 243
            H  ++ C+ ++L+CV   AEF  A+  +V  + ++N
Sbjct: 1014 HQEIERCIHVALLCVQESAEFRPAMERVVTMLNTKN 1049


>06_03_1458 +
           30301585-30301775,30302131-30302245,30302345-30302430,
           30302552-30302662,30303154-30303208,30303327-30303437,
           30304347-30304403,30304847-30305016,30305103-30305210,
           30305643-30305716,30305757-30305779,30306188-30306283,
           30306502-30306582,30306934-30307068,30307162-30307227,
           30307283-30307297
          Length = 497

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -2

Query: 272 SYENLLNDNQFLEIIVKTI--VMIANSNSAKTMTHIKDIL-KQNLTL*WIH 129
           S +NLL+DNQ ++ I++ +  +  A+ +  K +T +  +L   NL +  +H
Sbjct: 152 SSKNLLDDNQDIDAILRPMHEITFASDDKPKGLTQLSSLLGNLNLDIKEVH 202


>12_01_0805 -
           7378364-7378435,7378534-7378616,7378843-7379020,
           7379822-7379977,7380205-7380308,7381653-7381695,
           7382142-7382234,7382391-7382686,7382795-7382942,
           7383577-7383615
          Length = 403

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -1

Query: 105 QSINNKKWLLKTILKDNS---IDLCLL 34
           ++ NN KW LK  +K N+   +D+C L
Sbjct: 105 ETFNNHKWELKEKIKSNNTSHVDICKL 131


>12_01_0120 +
           912312-912615,913145-913371,913507-913754,914293-914656,
           914758-915154,915671-915693,916645-916987,917513-917532,
           918418-918527,919484-920255
          Length = 935

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 269 YENLLNDNQFLEIIVKTIVMIANSNSAKTMTHIKDILKQN 150
           +++   D+QFLE I K  + +  SN A   T  KD++  N
Sbjct: 838 FDDAEEDDQFLERICKMFIDLIVSNQALETTG-KDLIGSN 876


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 150 FNSLMDPLKLMQFNIQSINNKKWLLKTILKDNSIDLCL 37
           F   +  L  +  N++S+N+   LLK ++    +DL +
Sbjct: 516 FKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAI 553


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,289,327
Number of Sequences: 37544
Number of extensions: 74031
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)