Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c07
         (288 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      44   3e-05
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       27   2.9  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 32/49 (65%)
 Frame = -1

Query: 156 TKFNSLMDPLKLMQFNIQSINNKKWLLKTILKDNSIDLCLLNETWLKKS 10
           T+ N+ +D L +M +N +++ NK+  L   L++N I + L+NETWL  S
Sbjct: 3   TQTNNFIDNLNIMAWNARAVRNKRIELIKFLENNHIHIALINETWLTHS 51


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 129 LKLMQFNIQSINNKKWLLKTILKDNSIDLCLLNETWLKKSS 7
           + ++Q+NI  I N    L  ++KD++ D+  L ET L  +S
Sbjct: 3   ITILQWNIHGIFNNYNELTLLIKDHAPDIVFLQETKLPCNS 43


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,675,237
Number of Sequences: 53049
Number of extensions: 145029
Number of successful extensions: 224
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 486883320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)