Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c07
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    19   9.2  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 157 LSISLMCVIVFA 192
           LSIS  CVI FA
Sbjct: 246 LSISASCVIAFA 257


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 150  FNSLMDPLKLMQF 112
            F   MDP K MQF
Sbjct: 1733 FREEMDPSKAMQF 1745


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 54 SIDLCLLNET 25
          S+ +CLLNET
Sbjct: 10 SVLICLLNET 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,804
Number of Sequences: 438
Number of extensions: 1402
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)