Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c06
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    29   0.90 
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.7  
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar...    27   3.6  
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    27   3.6  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    27   3.6  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    26   4.8  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    26   6.3  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    26   6.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   8.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   8.4  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    25   8.4  

>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 565 NVKWVEKQKYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPES 723
           +V+  EK  Y  + VG+    P  +TK   G F S  + PK H+  F V   S
Sbjct: 79  DVRTKEKHGYYAVQVGSGIRKPKSITKAEQGNFFSHNIYPKMHVREFRVRDAS 131


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = +1

Query: 478 KVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKYGCILVGAENIDPSVVT---KD 648
           K +  L+QV  +     I  EE KP++ S V W E +K     +  E I  S+ +     
Sbjct: 361 KKARHLIQVSRDKYKLPISTEEIKPVVYSQVTWTEFEKKLLRYLVQEMIAKSIQSLPNTH 420

Query: 649 YCGIFDSVGM 678
            C ++  VG+
Sbjct: 421 LCQVYKEVGL 430


>SPBC26H8.09c |snf59||SWI/SNF complex subunit
           Snf59|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 515

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 529 IPPEEYKPMIKSNVKWVEKQKY 594
           I PE +K +I+ N+ W + + Y
Sbjct: 418 IDPESHKALIEKNISWADDEYY 439


>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +2

Query: 410 KQKEWDLLHER*ETIHYGVKMVKRYPRLCYRLLTIMLS 523
           K+++W+    + E I++G++ V   P +   L++ + S
Sbjct: 254 KKQDWEAALAKIEEIYFGIRPVSNQPNILANLMSSLFS 291


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 668 LSNIPQ*SLVTTLGSMFSAPTNIQPYF 588
           + N PQ S    L + FS P N QP F
Sbjct: 316 IQNQPQQSAFQNLNTQFSLPNNSQPVF 342


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 108 KIVKTLCSQIV*NYYGVLYKNRGLIMRRVIFVVHRGSLDFVHRIGMSQKRECGQ 269
           KI ++  S  +  YYG  Y N    +   +     GSLD +++   SQ    G+
Sbjct: 127 KINRSCTSPYIVKYYGACYNNAECQLNIAMEYCGAGSLDAIYKRVRSQGGRTGE 180


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 493 LLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 594
           LL+V+ N V  Y+PP   K  +  +   V  +KY
Sbjct: 266 LLKVIKNPVTDYLPPNCRKATLSFDAPTVPPRKY 299


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = -1

Query: 695 RCLFGSIPTLSNIPQ*SLVTTLGSMFSAPTNIQPYFCFSTHFTLDFIIGLYSSGGIYLIT 516
           +C+  ++  LS +   SL+   GS  +AP  + PYF FS      F +  Y+S  +++  
Sbjct: 410 KCVASNVSMLSFLGW-SLILHFGS--NAP--LYPYFSFSKEEPYSFKLTFYASTAVWISE 464

Query: 515 *LSTTCNRVV 486
            +++   R++
Sbjct: 465 MVASYLTRLI 474


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
 Frame = -3

Query: 441  LSCNKSHSFCLRSPCYIFFDIV*NGRGQCFFSNAVCASSLSFITSSKNCLFSLVR*SSVH 262
            L C K    C +S C  F     NG G+C      CAS +      K C    +    V 
Sbjct: 1843 LFCGKL--LCFQSHCCSF-----NGIGECNLHMQQCASDIGIFLIVKKCAILYLN-PPVG 1894

Query: 261  TLSFGTY--QYGGRNLGCR 211
            + S   +   YG  +LG R
Sbjct: 1895 SFSVAPFLDAYGETDLGLR 1913


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -3

Query: 726 SRFW*YNKSAEVPFWQHSNTVKYSTVIFGDN 634
           SR+W Y    E+P W         + IFG N
Sbjct: 86  SRWWGYVNRIEIPLWMRVPAFGLYSKIFGCN 116


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 251 KERVWTDDYLTKENKQFLEEVIKDKLEAQTALEKKH*P 364
           K+ +  D Y + E  + L++ I+ K   +   EKKH P
Sbjct: 141 KKLIQMDKYKSMEGTKALDKYIEKKRRRRAQKEKKHLP 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,394
Number of Sequences: 5004
Number of extensions: 68521
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)