Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c06
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0929 - 29474540-29475247,29475485-29475850,29476032-294760...    28   6.6  
12_01_0074 - 615794-615883,616186-616391,616524-616614                 28   8.7  
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159...    28   8.7  
03_06_0199 + 32310272-32311432                                         28   8.7  

>04_04_0929 -
           29474540-29475247,29475485-29475850,29476032-29476093,
           29476191-29476302,29476401-29476529,29476724-29476738
          Length = 463

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 179 DNAACNIRGASRQPRFRPPYWYVPKERVWTDDYLTKENKQFLE 307
           D++  ++   +R P+ R PY    +   WT+D    E+K FLE
Sbjct: 34  DSSGMDMMDEARIPKARKPYTITKQREKWTED----EHKLFLE 72


>12_01_0074 - 615794-615883,616186-616391,616524-616614
          Length = 128

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 343 IRKKALTSPILNDVKKNVTWTPQTKRVGLIARKIGNYPLWCK 468
           I  +AL + I    K+   W   T  +  + ++IG+Y  W K
Sbjct: 68  IEARALLATIARYKKQTDQWLAATNAINSVLKEIGDYENWMK 109


>10_08_1042 -
           22515298-22515354,22515614-22515709,22515806-22515988,
           22516277-22516365,22516481-22516722,22517008-22518116
          Length = 591

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/67 (25%), Positives = 26/67 (38%)
 Frame = +1

Query: 415 KRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEEYKPMIKSNVKWVEKQKY 594
           + +  + RK  N    C D    S       DN V+++   E +K  IK + K    Q Y
Sbjct: 14  RNISSLKRKRDNPAARCADAGNTSKLHKHPADNSVVRFYVDEGHKAKIKCHFKMQIIQSY 73

Query: 595 GCILVGA 615
              +  A
Sbjct: 74  QNFMTSA 80


>03_06_0199 + 32310272-32311432
          Length = 386

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 200 RGAS-RQPRFRPPYWYVPKERVWTD 271
           RGAS R PRFRP +W +  E   TD
Sbjct: 18  RGASARDPRFRPRHWAMLDEVFQTD 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,042,532
Number of Sequences: 37544
Number of extensions: 399949
Number of successful extensions: 857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)