Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c06
         (728 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA...    60   1e-08
CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.                60   1e-08
BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal...    60   1e-08
Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.                   30   9.8  
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran...    30   9.8  
AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette tr...    30   9.8  
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p...    30   9.8  

>X06323-1|CAA29639.1|  348|Homo sapiens protein ( Human MRL3 mRNA
           for ribosomal protein L3 homologue ( MRL3 =  mammalian
           ribosome L3 ).  ).
          Length = 348

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 28/47 (59%), Positives = 32/47 (68%)
 Frame = +1

Query: 400 WTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPE 540
           W P + RVGLIA K+G  PLW KDG+K   TLLQV D HV+KY   E
Sbjct: 90  WEPGSFRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE 136



 Score = 31.1 bits (67), Expect = 4.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 251 KERVWTDDYLTKENKQFLEEVIKDKLEAQTA 343
           K   W D++L++EN  F+++++ D+ +AQ A
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLA 74


>CR456720-1|CAG33001.1|  348|Homo sapiens MRPL3 protein.
          Length = 348

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 28/47 (59%), Positives = 32/47 (68%)
 Frame = +1

Query: 400 WTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPE 540
           W P + RVGLIA K+G  PLW KDG+K   TLLQV D HV+KY   E
Sbjct: 90  WEPGSFRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE 136



 Score = 31.1 bits (67), Expect = 4.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 251 KERVWTDDYLTKENKQFLEEVIKDKLEAQTA 343
           K   W D++L++EN  F+++++ D+ +AQ A
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLA 74


>BC003375-1|AAH03375.1|  348|Homo sapiens mitochondrial ribosomal
           protein L3 protein.
          Length = 348

 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 28/47 (59%), Positives = 32/47 (68%)
 Frame = +1

Query: 400 WTPQTKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPE 540
           W P + RVGLIA K+G  PLW KDG+K   TLLQV D HV+KY   E
Sbjct: 90  WEPGSFRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSKE 136



 Score = 31.1 bits (67), Expect = 4.2
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 251 KERVWTDDYLTKENKQFLEEVIKDKLEAQTA 343
           K   W D++L++EN  F+++++ D+ +AQ A
Sbjct: 44  KSGTWWDEHLSEENVPFIKQLVSDEDKAQLA 74


>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
          Length = 2273

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 484  STTLLQVVDNHVIKYIPPEEYKPMIKSNVK---WVEKQKYGCILVGAE 618
            ST +LQ + +  I     + Y  +I+S++K   WV +Q+YG I +G +
Sbjct: 1518 STEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISIGGK 1565


>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
            transporter protein.
          Length = 2273

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 484  STTLLQVVDNHVIKYIPPEEYKPMIKSNVK---WVEKQKYGCILVGAE 618
            ST +LQ + +  I     + Y  +I+S++K   WV +Q+YG I +G +
Sbjct: 1518 STEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISIGGK 1565


>AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette
            transporter protein.
          Length = 2273

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 484  STTLLQVVDNHVIKYIPPEEYKPMIKSNVK---WVEKQKYGCILVGAE 618
            ST +LQ + +  I     + Y  +I+S++K   WV +Q+YG I +G +
Sbjct: 1518 STEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISIGGK 1565


>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
            protein.
          Length = 2303

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 484  STTLLQVVDNHVIKYIPPEEYKPMIKSNVK---WVEKQKYGCILVGAE 618
            ST +LQ + +  I     + Y  +I+S++K   WV +Q+YG I +G +
Sbjct: 1548 STEILQDLTDRNISDFLVKTYPALIRSSLKSKFWVNEQRYGGISIGGK 1595


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,615,197
Number of Sequences: 237096
Number of extensions: 2275691
Number of successful extensions: 4527
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4527
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)