Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c06
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-9|AAA21160.3|  403|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U13875-9|AAA21160.3|  403|Caenorhabditis elegans Hypothetical
           protein C26E6.6 protein.
          Length = 403

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +1

Query: 412 TKRVGLIARKIGNYPLWCKDGKKVSTTLLQVVDNHVIKYIPPEE-YKPMIKSNVKWVEKQ 588
           ++RVGL+ RKIG  P W  +G ++  T+L+V +NHV+    PE  YK       K   + 
Sbjct: 100 SRRVGLVVRKIGMLPQWTNEGNRILCTVLEVDENHVVSITSPEAWYKSSAVGKRKAFNRH 159

Query: 589 -KYGCILVGAENIDPSVVTKDYCGIFDSVGMLPKRHLCRFVVSPES 723
                + VGA N DP+  T  Y   F   G+  K  L  F+V+ ++
Sbjct: 160 GPMWRVTVGAGNDDPTKYTLGYRRQFVRAGIPVKEKLGCFLVTEDA 205


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 457 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 564
           +W  + +K     +QVVDN++  +K++P    KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical
           protein F36A2.13 protein.
          Length = 2944

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +1

Query: 457 LWCKDGKKVSTTLLQVVDNHV--IKYIPPEEYKPMIKS 564
           +W  + +K     +QVVDN++  +K++P    KP+ +S
Sbjct: 656 VWIHEHRKRDVMTVQVVDNNLVAVKHVPNSSQKPIFQS 693


>U41037-2|AAA82388.3|  651|Caenorhabditis elegans Hypothetical
           protein T24C12.3 protein.
          Length = 651

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 556 IKSNVKWVEKQKYGCILVGAENIDPSVVTK 645
           I   V+++E     CI+ G EN+ PS  T+
Sbjct: 175 IPKTVEYLETHSVNCIVYGQENVFPSFFTR 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,269
Number of Sequences: 27780
Number of extensions: 381153
Number of successful extensions: 1095
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)