Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c05
         (254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    23   6.4  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    23   8.5  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    23   8.5  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.5  

>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 187 SYDKLSVIVISSIYRGVKG 131
           SYD+ +  V+S I+RG+ G
Sbjct: 320 SYDQPAFEVVSQIFRGLTG 338


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 51  LKYRTVDANTKENGSLITKIN 113
           L Y   +A    NG+L+TK+N
Sbjct: 733 LSYTFFEARYDTNGNLLTKLN 753


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 51  LKYRTVDANTKENGSLITKIN 113
           L Y   +A    NG+L+TK+N
Sbjct: 733 LSYTFFEARYDTNGNLLTKLN 753


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 63  TVDANTKENGSLITKINVL*IT*PFTPRYIEEITITD 173
           TVD N  E  S ITK+++  +    TPR    + + D
Sbjct: 222 TVDTNALEENSWITKLDMQSLQHFRTPRINVVLIVED 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 895,286
Number of Sequences: 5004
Number of extensions: 14090
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)