Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c05
         (254 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z82264-4|CAB05162.1|  491|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z82055-3|CAB04845.1|  385|Caenorhabditis elegans Hypothetical
           protein T26H2.3 protein.
          Length = 385

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 16/65 (24%), Positives = 35/65 (53%)
 Frame = -2

Query: 202 ITAFISYDKLSVIVISSIYRGVKGYVI*RTFIFVIKDPFSLVLASTVRYFKLNFN*AYSI 23
           + AF + + +++I IS   +  K  V     +  I+  F ++L++ +R   +NF  ++ +
Sbjct: 17  LNAFQTTEYVNLIAISFCSQRSKSIVESAKLLHAIE--FIIILSTHIR-ISMNFINSFQV 73

Query: 22  YLYIN 8
           Y Y+N
Sbjct: 74  YFYLN 78


>Z82264-4|CAB05162.1|  491|Caenorhabditis elegans Hypothetical
           protein C49C3.9 protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 135 FTPRYIEEITITDNLS*LINAVMFCCAFV 221
           F  RY   +T + N+S    A+  CCAF+
Sbjct: 462 FLVRYT--VTSSGNISTFFGAIFLCCAFL 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,688,670
Number of Sequences: 27780
Number of extensions: 72045
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)