Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c02
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 31 1.1
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619... 30 1.4
03_03_0187 + 15253000-15253207,15253281-15253370,15254338-152544... 30 1.8
01_07_0180 + 41832357-41832680,41833024-41833367,41833789-418339... 30 1.8
02_05_0622 + 30437533-30437577,30437694-30438177,30438301-304383... 29 4.2
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904... 28 5.6
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465... 28 5.6
02_01_0412 - 3005600-3007759 28 5.6
02_02_0248 - 8267332-8268276,8268338-8269288 27 9.8
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 364 PYYFYLFCQVILLTLVFVMLWVWFGKTIVIPFF 462
PY+ + ++L++V+++L+V FG I + FF
Sbjct: 393 PYWIIYYAYFLILSMVYLVLFVVFGSVIGLNFF 425
>02_02_0028 +
6196453-6196512,6196936-6197320,6197843-6197925,
6198060-6198183,6198404-6198523,6198595-6198755,
6198999-6199157,6199272-6199434,6199604-6199729,
6199775-6199900,6200400-6200764,6201204-6201404,
6201685-6201794,6201919-6202003,6202553-6202681,
6202763-6202868,6202984-6203072,6203172-6203474
Length = 964
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 361 FPYYFYLFCQVILLTLVFVMLWVWFGKTIVIPFF 462
F Y+ +C LL+L++VM + FG + + FF
Sbjct: 390 FSYWTISYCYFFLLSLLYVMSFTLFGSVLGLRFF 423
>03_03_0187 +
15253000-15253207,15253281-15253370,15254338-15254402,
15254489-15254535,15255195-15255270,15255432-15255499,
15255793-15255862,15256024-15256109,15256328-15256390,
15256472-15256537,15256938-15256986
Length = 295
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -3
Query: 509 RVSCGSVSVRTSQKVTKNGITIVLPNQTHN--MTNTSVSNI 393
RV CGSV +SQ+V NG+ I + + + TSV I
Sbjct: 85 RVDCGSVCAGSSQRVAANGVVIATEKKLPSILVDETSVQKI 125
>01_07_0180 +
41832357-41832680,41833024-41833367,41833789-41833945,
41834119-41834430,41834537-41834908
Length = 502
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -2
Query: 339 DLRDFTNEPLYHHPIHEAL-VCSSTERYTAFPKPCTQYIWEAKHFPPVISEDIIGLRVKT 163
DLR+ ++ L H+P+H+ + V +R + +YI E+ H PP++ D V
Sbjct: 311 DLRNKSDLLLNHNPVHKLVPVLLHGDRSLSESLVILEYIDESFHGPPILPTDPYDRAVAR 370
Query: 162 LYFNFV 145
+ F+
Sbjct: 371 FWAQFI 376
>02_05_0622 +
30437533-30437577,30437694-30438177,30438301-30438354,
30438565-30438789,30438891-30438943,30439591-30439714,
30439823-30440077,30440171-30440517,30440661-30441266,
30441504-30441546,30441624-30441757
Length = 789
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 GSVLLPIYIVCTVLGMLCIALCWNKPV 287
G ++ + +V T L L I LCWNK +
Sbjct: 414 GLAVITVMLVTTCLMSLVIVLCWNKSI 440
>06_01_1101 -
9044679-9045320,9045484-9045890,9046020-9046274,
9046375-9046498,9047237-9047289,9047388-9047648,
9047795-9047848,9047975-9048458,9048554-9048592
Length = 772
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 207 GSVLLPIYIVCTVLGMLCIALCWNKPV 287
G ++ + +V T L L I LCWNK +
Sbjct: 424 GLAVITVMLVTTCLMSLVILLCWNKSI 450
>05_01_0539 +
4653028-4653158,4654329-4654973,4655323-4655448,
4655537-4655813,4655916-4656143
Length = 468
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 391 VILLTLVFVMLWVWFGKTIVIPFFVTFWEVLTDTEPQETRKNIT 522
V L L F+++W + G+ + + TFW + ETR T
Sbjct: 33 VFLRKLPFLIIWCFSGRCNQLNSYATFWLMAVPPVESETRSEET 76
>02_01_0412 - 3005600-3007759
Length = 719
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = -2
Query: 351 IRCGDLRDFTNEPLYHHPIHEALVCSSTERYTAFPK 244
++ + D+T+ L+ P++ +C TAFPK
Sbjct: 524 LKSDKIADYTDPRLFQFPVYVGCMCFQYRTITAFPK 559
>02_02_0248 - 8267332-8268276,8268338-8269288
Length = 631
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +2
Query: 77 YNDTQSQWLRKRKRRSEKNGYDVTKL 154
+ND + QW +R+R ++ G+ VT+L
Sbjct: 414 FNDRRGQWTLRRERCYQELGWSVTEL 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,075,460
Number of Sequences: 37544
Number of extensions: 332064
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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