Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b21
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    64   3e-11
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    31   0.22 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    30   0.39 
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    29   0.68 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.90 
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    28   1.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    28   1.6  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    27   2.1  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    27   2.7  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   3.6  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    27   3.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   4.8  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   4.8  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    23   6.1  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   6.3  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.3  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    25   8.4  
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb...    25   8.4  
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom...    25   8.4  

>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
 Frame = +1

Query: 514 ISPRSI-PHHKIVAGTY-FAVDAFSYGDIPNVKHYFLTHFHSDHYTGLKKSF-NKQLFCS 684
           I+ RS+ P +K++     FAVDAF+YG I  V+ YFL+HFHSDHY GL   + +  ++CS
Sbjct: 177 INVRSVVPFYKLMPYNIPFAVDAFAYGAIDGVEAYFLSHFHSDHYGGLTPKWKHGPIYCS 236

Query: 685 RITADLCISRLGVN 726
            +T +L I+ + V+
Sbjct: 237 EVTGNLLINVMHVD 250


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 601 VKHYFLTHFHSDHYTGL 651
           +K  F+TH HSDHY GL
Sbjct: 465 LKAIFITHLHSDHYLGL 481


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
 Frame = +1

Query: 190 EDTNADQIENVASVRAMSKNSCVGDTNRRTLCKVNDR--NNESPRSVKTTSI--RREIIS 357
           +D+ A+Q E  +  +  SKNS   D N  ++   + +  +N SP S+  + +  +R  + 
Sbjct: 83  DDSFANQAEKPSMEQQNSKNSIKEDANEHSVNSAHSKSSSNASPESLNPSQMMSKRLSLP 142

Query: 358 PRSQ--DVKIIR-TETPHVQSAKVRNESAS 438
           P SQ  D   +    TP  QS  +   ++S
Sbjct: 143 PMSQFTDSDFVNILRTPFAQSTPLNRNTSS 172


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -1

Query: 344 RLIDVVLTDLGDSLFLSFTLHSVLLLVSPTQEFLLIALTLATFSI 210
           +L D+V+ +  D   L   +H+VL L++P+  F L+ L L    I
Sbjct: 171 QLADIVIENNSDLETLYENIHNVLPLITPSYFFTLLCLILPPLQI 215


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 154 LPKIVNVFSLKGEDTNADQIENVASVRAMSKNS 252
           +P+I N  S K   TN +Q+  + S+RA S NS
Sbjct: 189 VPEITNEVSPKFTSTNDEQVYRLRSIRAGSPNS 221


>SPBC2F12.05c |||sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/74 (25%), Positives = 30/74 (40%)
 Frame = +1

Query: 388 TETPHVQSAKVRNESASAHWPRKGIETLNFSLPAKSKSNRTSISPRSIPHHKIVAGTYFA 567
           TET H+     R ES  +  P +G  T   SLP++  +    +   SIP  +   G +  
Sbjct: 702 TETKHL-----RKESTPSKQPTEGQHTRQESLPSQQTTETKHLRKESIPSKQPTEGQHAR 756

Query: 568 VDAFSYGDIPNVKH 609
            ++         KH
Sbjct: 757 QESLPSQQTTETKH 770


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = +1

Query: 193 DTNADQIENVASVRAMSKNSCVGDTNRRTLCKVNDRNNESPRSVKTTSIRREIISPR--- 363
           D + D+I      R     S V    R  + K ND NNES    +   I   I SPR   
Sbjct: 514 DLSLDEIREELDARLPLLKSIV---ERYLISKKNDNNNESIHISRLLDIEESIWSPRFGL 570

Query: 364 ----SQDVKIIRTETPHVQS 411
                  V+++ TE P   S
Sbjct: 571 KGNIDATVEVVLTEKPESSS 590


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 310 SPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIETLNFSLPA 489
           +P  + +TSIR    +PR+  +K  R+ + H  S+   + S S+++       ++   P 
Sbjct: 275 APTPIASTSIRINSFNPRNGSIKRWRSFSRH--SSATYSNSPSSNFSNMKSSEVDPGSPP 332

Query: 490 KSKSNRTSISPRS 528
           + KS   S+S  S
Sbjct: 333 RIKSRSYSLSRSS 345


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 508 TSISPRSIPHHKIVAGTYFAVDAFSYGDIPNVKHYFLTHFHSDHYTGLKKSF 663
           T  S R+I H++ +AG Y  V     G +P+   YF+ +       G+ K +
Sbjct: 54  TLSSMRTIFHNEGIAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLFGVNKKY 105


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +1

Query: 565 AVDAFSYGDIPNVKHYFLTHFHSDHYTGLKKSFNKQLFCSRI 690
           A+  F   D+  V    ++HFH DH   L     K  F  R+
Sbjct: 77  ALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRV 118


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = +1

Query: 280 LCKVNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKG 459
           L K+  +       +    + REI+SP  + +K      P         +S S    ++G
Sbjct: 194 LAKIEKKYGNITLGLIRALLAREILSPAEKALKAALLAEPKTAELSNSMKSTSMFAFKEG 253

Query: 460 IETLNFSLPAKSK 498
           IET+  S+  + K
Sbjct: 254 IETITLSIADELK 266


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 708 DTEIRCYS*TE*LFIKAFLQTSVVIGVKMGQ 616
           D + +C+S  E LF++     + V+G KMG+
Sbjct: 604 DEKQKCFSLREILFLRCLSSIAKVVGEKMGK 634


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 24/80 (30%), Positives = 33/80 (41%)
 Frame = +1

Query: 97  LNNGNFASTKLKQKSIHDFLPKIVNVFSLKGEDTNADQIENVASVRAMSKNSCVGDTNRR 276
           L  GN   T  K K+   +L  +   F     D    Q+E   +VR M  N    + N  
Sbjct: 179 LELGNKVQTLGKAKNKKHWLG-VYQSFGKASVDQIQKQLE-CYNVRMMELNK-TDENNES 235

Query: 277 TLCKVNDRNNESPRSVKTTS 336
            +C+    + E  RS KTTS
Sbjct: 236 AICESQASSKEDERSDKTTS 255


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 22.6 bits (46), Expect(2) = 6.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 262 DTNRRTLCKVNDRNNESPRSVKTTSIRREIISPRSQD 372
           D     +   ND NN+SP+ +K     R++  P ++D
Sbjct: 240 DLEEEDMMHQNDPNNQSPKLLKEF---RKLHEPNAED 273



 Score = 21.4 bits (43), Expect(2) = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 448 PRKGIETLNFSLPAKSKSNRTSISPR-SIP 534
           P KG++ L+     K  S R  + PR S+P
Sbjct: 284 PHKGVDILSEVEAVKDWSKRLHLGPRASLP 313


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +1

Query: 262 DTNRRTLCKVNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNES 432
           +TNR  L   N   NE+ +SVK+ +  R+   P    V+ ++ +   V + K+++E+
Sbjct: 320 NTNRTLLRNANLTLNEAQQSVKSLT-ERQGPRPSDNGVQDLQEKMQEVNAEKLQHEN 375


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 444 VGACAFISYFSRLYMRCFGSYYFDILTPRRY 352
           +GAC  +S+   +   C+ +YY+  L    Y
Sbjct: 368 IGACCAMSFLFYITFYCWDNYYYSFLQVVHY 398


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 573 CIFIWGHTKREALFSDPFSLRSLHWFEEK 659
           C+F++G T    L   PF+L S    EEK
Sbjct: 158 CVFMFGLTLFSRLIQIPFNLYSTFVIEEK 186


>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 547 VAGTYFAVDAFSYGDIPNVKHYFLTHFHSDHYT 645
           VA T+F +  F++  +    H FL  FH D YT
Sbjct: 184 VAITFFIIGLFTWTLVEYTMHRFL--FHLDEYT 214


>SPAC1805.16c |||purine nucleoside phosphorylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 25  YKLEKRKIIYDSWKGNKRRLLDATLNNGNFA 117
           Y LE RK++YD+ K +K   +  T++ G +A
Sbjct: 185 YDLELRKLVYDAAKAHK---VSRTIHEGCYA 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,941
Number of Sequences: 5004
Number of extensions: 66839
Number of successful extensions: 239
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)