Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25b21
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 69 5e-12
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 61 1e-09
04_03_0810 - 19902049-19902069,19902195-19902400,19902523-199025... 59 4e-09
08_01_0053 + 365188-365376,365451-365729,365818-367341 35 0.076
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 35 0.076
07_03_0536 - 19205515-19205686,19205807-19205931,19206428-192065... 28 6.6
01_06_1199 + 35355690-35355732,35355793-35355930,35356366-353563... 28 6.6
08_02_1477 - 27375872-27376723,27376825-27377091 28 8.7
02_01_0588 + 4350971-4351514,4351639-4351703 28 8.7
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 68.5 bits (160), Expect = 5e-12
Identities = 38/82 (46%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Frame = +1
Query: 484 PAKSKSNRTSISPRSIPHHKIVAGTYFAVDAFSY-GDIPNVKHYFLTHFHSDHYTGLKKS 660
P+ S ++ S P S+P ++ G+ F VDAF + GD YFL+HFHSDHYTGL S
Sbjct: 36 PSASAASPLSPVPASVPPTALIPGSRFLVDAFRHAGDF--TASYFLSHFHSDHYTGLGPS 93
Query: 661 FNKQL-FCSRITADLCISRLGV 723
+ + L FCS +TA L +S L V
Sbjct: 94 WRRGLVFCSPLTARLLVSVLSV 115
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 60.9 bits (141), Expect = 1e-09
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Frame = +1
Query: 487 AKSKSNRTSISPR--SIPHHKIVAGTYFAVDAFSY--GDIPNVKHYFLTHFHSDHYTGLK 654
AK+ R ++ + P + GT F VDAF Y GD H+FLTHFH DHY GL
Sbjct: 616 AKATGGRRTVKGKVKDTPIWCCIPGTPFRVDAFRYLRGDCC---HWFLTHFHVDHYQGLT 672
Query: 655 KSF-NKQLFCSRITADLCISRLGV 723
KSF + +++CS +TA+L ++G+
Sbjct: 673 KSFCHGKIYCSSVTANLVHYKIGI 696
>04_03_0810 -
19902049-19902069,19902195-19902400,19902523-19902559,
19902623-19902675,19903149-19903226,19903496-19903586,
19903773-19903917,19903988-19904227,19904313-19904523,
19904788-19905232
Length = 508
Score = 58.8 bits (136), Expect = 4e-09
Identities = 29/59 (49%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Frame = +1
Query: 553 GTYFAVDAFSYGDIPNVKHYFLTHFHSDHYTGL-KKSFNKQLFCSRITADLCISRLGVN 726
GT F VDAF YG + YFL+HFH DHY GL KK + ++C+ +TA L L VN
Sbjct: 159 GTPFTVDAFRYGAVEGCNAYFLSHFHHDHYGGLTKKWCHGPIYCTALTARLVKMCLSVN 217
>08_01_0053 + 365188-365376,365451-365729,365818-367341
Length = 663
Score = 34.7 bits (76), Expect = 0.076
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 553 GTYFAVDAFSYGDIPNVKHYFLTHFHSDHYTGLKKSFNKQLFCSRIT 693
G FAVD ++ +H FLTH H DH G+ + ++ SR+T
Sbjct: 8 GLPFAVDTWTAASAVK-RHRFLTHAHRDHIAGITATNVAAVYASRLT 53
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 34.7 bits (76), Expect = 0.076
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 565 AVDAFSYGDIPNVKHYFLTHFHSDHYTGLKKS---FNKQLFCSRITADLCISR 714
+VD FS G + YFLTH H DH GL + + L+CS +TA L +R
Sbjct: 7 SVDKFSGGS----QAYFLTHLHQDHTRGLGAAGGWRHGPLYCSPVTARLLPTR 55
>07_03_0536 -
19205515-19205686,19205807-19205931,19206428-19206554,
19206653-19206777,19207616-19207708,19207779-19208052,
19208138-19208269,19208391-19208470,19209049-19209117,
19209227-19209343,19209416-19209484,19209839-19209892,
19210012-19210049,19211243-19211354,19211497-19211619,
19211728-19211755,19212048-19212104,19212984-19213028,
19213340-19213361,19213817-19213844,19214338-19214418
Length = 656
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +2
Query: 500 PIVHRFLQEVYHIIKSLQG----LISRLMH 577
P+VH FL + H+ K L G LI R++H
Sbjct: 567 PVVHTFLDSLMHLEKELPGSCEVLIGRMLH 596
>01_06_1199 +
35355690-35355732,35355793-35355930,35356366-35356389,
35356450-35356587,35356974-35357056,35358881-35358922,
35359151-35359231,35359319-35359414,35359530-35359736,
35359810-35359963,35360170-35360373,35361037-35361921,
35362025-35362071
Length = 713
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +2
Query: 392 KHLMYNLLK*EMKAQAPTGPGKESR 466
KH+ +NL K + + + P+G GK+SR
Sbjct: 679 KHIEFNLAKKKKENKKPSGTGKDSR 703
>08_02_1477 - 27375872-27376723,27376825-27377091
Length = 372
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 2/103 (1%)
Frame = +1
Query: 148 DFLPKIV--NVFSLKGEDTNADQIENVASVRAMSKNSCVGDTNRRTLCKVNDRNNESPRS 321
D LPK N FS N + R N C RR LC+++ R P
Sbjct: 68 DLLPKYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANDCFRRGERRLLCEIHRRKVTPPAP 127
Query: 322 VKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWP 450
TT+ I P + V R +P + + S+S+ P
Sbjct: 128 AATTAAVAAAI-PMALPVTTTRDGSPVLSGEEQVISSSSSPEP 169
>02_01_0588 + 4350971-4351514,4351639-4351703
Length = 202
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/79 (21%), Positives = 38/79 (48%)
Frame = +1
Query: 319 SVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIETLNFSLPAKSK 498
S+K++S + +S S+ + I++ + + +A WP + + + S + S
Sbjct: 15 SLKSSSKNKAAMSTLSERKRAIKSSADIAMATARTGIAGAARWPHAILASSSSSSSSSSS 74
Query: 499 SNRTSISPRSIPHHKIVAG 555
S+ +S PR+ K++ G
Sbjct: 75 SSSSSSMPRTTFPCKMMQG 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,573,594
Number of Sequences: 37544
Number of extensions: 375812
Number of successful extensions: 880
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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