Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25b21
(728 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81080-3|CAD30439.1| 608|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 30 1.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 30 1.5
U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical ... 29 3.4
AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical... 29 3.4
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 29 4.5
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 29 4.5
>Z81080-3|CAD30439.1| 608|Caenorhabditis elegans Hypothetical
protein F39H2.5 protein.
Length = 608
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +1
Query: 604 KHYFLTHFHSDHYTGLKKSFNKQLFCSRITADL 702
++ FLTH HSDHY GL K + + ++CS TA L
Sbjct: 235 RYNFLTHAHSDHYRGLDKKWTRSVYCSPETAKL 267
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +1
Query: 286 KVNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIE 465
K+ + +N S S +TS+ RE+ R + II T T + + NE + +K
Sbjct: 3523 KIEEEDNVSEYSESSTSVSREV---RPDEPHIIETTTTTTVTREYHNEPEETYDDQKDAA 3579
Query: 466 TLNFSLPAKSKSNRTS 513
++FS + ++ S
Sbjct: 3580 PISFSQEHQDDDSQAS 3595
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/76 (25%), Positives = 35/76 (46%)
Frame = +1
Query: 286 KVNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIE 465
K+ + +N S S +TS+ RE+ R + II T T + + NE + +K
Sbjct: 3523 KIEEEDNVSEYSESSTSVSREV---RPDEPHIIETTTTTTVTREYHNEPEETYDDQKDAA 3579
Query: 466 TLNFSLPAKSKSNRTS 513
++FS + ++ S
Sbjct: 3580 PISFSQEHQDDDSQAS 3595
>U23139-2|AAL02483.1| 460|Caenorhabditis elegans Hypothetical
protein F13H8.11 protein.
Length = 460
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +1
Query: 10 VQPPNYKLEKRKIIYDSWKGNKRRLLDA---TLNNGNFASTKLKQK---SIHDFLPKIVN 171
+ PPN +E +++ WK + +D+ + NF + +K S+H P +
Sbjct: 17 ISPPNEIIETSVEVFNQWKETRNAFMDSMEYPMGFPNFNCPQPHRKSSESVHQLHPSQIG 76
Query: 172 VFSLKGEDTNADQIENVASV 231
V + G+ + Q +S+
Sbjct: 77 VIAALGDSVSVAQAAKSSSI 96
>AL117199-4|CAN99722.1| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = +1
Query: 289 VNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIET 468
V+ +N + + S+ E + +S ++ ETP ++ +N S S + P K T
Sbjct: 510 VSAQNRSDLQEIPRKSVTLEKSAQKSVEMAPEAPETPLKTISQEKNRSESHNLPEKSAST 569
Query: 469 LNFSLPAKSKSNRTSISPRS 528
++ + N + I+P S
Sbjct: 570 QRPTITLQESLNLSKITPES 589
>AL117195-32|CAB60770.3| 1342|Caenorhabditis elegans Hypothetical
protein Y57A10A.1 protein.
Length = 1342
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/80 (22%), Positives = 36/80 (45%)
Frame = +1
Query: 289 VNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPRKGIET 468
V+ +N + + S+ E + +S ++ ETP ++ +N S S + P K T
Sbjct: 510 VSAQNRSDLQEIPRKSVTLEKSAQKSVEMAPEAPETPLKTISQEKNRSESHNLPEKSAST 569
Query: 469 LNFSLPAKSKSNRTSISPRS 528
++ + N + I+P S
Sbjct: 570 QRPTITLQESLNLSKITPES 589
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +1
Query: 274 RTLCKVNDRNNESPRSVKTTSIRREIISPRSQDVKIIRTETPHVQSAKVRNESASAHWPR 453
+ L ++ + +N PRS + E + + T V+ A V++ SAS P
Sbjct: 321 KALPELTELSNLPPRSPGLSCEETETSASPVNSSSSHSSPTSPVKPAPVKHRSASQKLPG 380
Query: 454 KGIETLNFSLPAKSKSNRTSISPR 525
K +TLN PA S + T +S +
Sbjct: 381 KSTKTLN-PKPAGSTRSVTPVSTK 403
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 28.7 bits (61), Expect = 4.5
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Frame = +1
Query: 13 QPPNYKLEKRKIIYDSWKGNKRRLLDATLNNGNFASTKLKQKSIHDFLPKIVNVFSLKGE 192
+P + K + KI DS K +R +N S+ +K PK+V S +GE
Sbjct: 32 EPKSLKNDTPKISNDSEKKVLKR------SNSKTVSSPVKTPRNASKRPKVVVCSSSEGE 85
Query: 193 DTNADQ-IENVASVRAMSKNSCVGDTNRRTLCKVNDRNNESPRSVKTTSIRREIISP 360
D + D+ E + S + D N C+V + +P+S +++I P
Sbjct: 86 DDDGDEDFEMKEAEEHESSDESEADENASD-CEVVESPESTPQSTPKRGGKKKISKP 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.130 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,686,311
Number of Sequences: 27780
Number of extensions: 361793
Number of successful extensions: 1111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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