Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b21
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.9  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/60 (20%), Positives = 30/60 (50%)
 Frame = +1

Query: 130 KQKSIHDFLPKIVNVFSLKGEDTNADQIENVASVRAMSKNSCVGDTNRRTLCKVNDRNNE 309
           K+  ++  LP++ +  ++  +    D I+N    R +S      +  ++ L KV D++++
Sbjct: 308 KKSKVNFALPELQHNLNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQHSQ 367


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 310 IHCFCRLLCTASFYWYHRHKNSYSSPS 230
           ++  C +LC +  +W   H NS + P+
Sbjct: 289 VNLICHILCMSDLHWQLPH-NSTNPPN 314


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 64  KGNKRRLLDATLNNGN 111
           K NKR+L D+T+N  N
Sbjct: 434 KDNKRKLSDSTMNKIN 449


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 506 VHRFLQEVYHIIKSLQGLISR 568
           VH  +Q ++ IIKS    I+R
Sbjct: 55  VHNHIQNIFKIIKSTNEKITR 75


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 506 VHRFLQEVYHIIKSLQGLISR 568
           VH  +Q ++ IIKS    I+R
Sbjct: 38  VHNHIQNIFKIIKSTNEKITR 58


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 579 KCINREISPCNDF 541
           KC NR ++ CN F
Sbjct: 710 KCHNRNVTTCNMF 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,846
Number of Sequences: 438
Number of extensions: 4920
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)