Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b18
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0834 - 21626491-21626508,21626720-21626843,21626927-216270...    98   8e-21
03_05_1069 + 30118930-30120120                                         29   4.0  
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526...    29   5.2  
02_04_0611 + 24347384-24350015,24350126-24350497,24350561-243508...    28   9.2  
01_01_0101 - 766382-767487,767599-767756,767900-768615                 28   9.2  

>08_02_0834 -
           21626491-21626508,21626720-21626843,21626927-21627012,
           21627869-21627874
          Length = 77

 Score = 97.9 bits (233), Expect = 8e-21
 Identities = 40/69 (57%), Positives = 55/69 (79%)
 Frame = +2

Query: 140 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKA 319
           +R+NI+SQLEHLQ+KY+GTGHAD  ++EW +N  RDS  SY+GH  +L+YF+I ENES  
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESIG 64

Query: 320 RVKFNLMER 346
           R ++N M+R
Sbjct: 65  RERYNFMQR 73


>03_05_1069 + 30118930-30120120
          Length = 396

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 194 TGHADTTKYEWLMNQHRDSCCSYM-GHPDLLSYFAIVE-NESKARVKFNLME 343
           +G AD T Y W  +    SC S + GH + +   AIVE N+  A V  + ++
Sbjct: 281 SGSADNTIYVWRRDGGVHSCLSVLTGHTEPIRCLAIVEDNKDNAAVPVDAVD 332


>11_01_0650 -
           5265106-5265305,5265972-5266049,5266391-5266544,
           5266635-5266701,5266723-5266796,5266910-5267794
          Length = 485

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 484 ISITFNKHN*SIQIVPPKTQLLSIKTTNFNNRYSL*FRIGSMVKCLTILFLYTNLF 651
           +SIT    N ++++      L+S++   F+NR  +  R+ S+V     +F YT  F
Sbjct: 195 LSITCCSFNATLRVRVDVPSLVSLRLDEFDNRAPVLERMPSLVDAFVRIFFYTKDF 250


>02_04_0611 +
           24347384-24350015,24350126-24350497,24350561-24350805,
           24350997-24351059,24351919-24352422
          Length = 1271

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 541 QLLSIKTTNFNNRYSL*FRIGSMVKCLTILFLYTNLF--HIVLSQRN 675
           Q+LSI+TT      +L F IG+ +  LT LFL  N+F  HI  S  N
Sbjct: 250 QILSIQTTLLGG--TLPFDIGNTLPNLTKLFLADNMFEGHIPASLGN 294


>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 301 YDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVGVAC 194
           YDR + QQ+ +  ++AA VA +       C +G+ C
Sbjct: 564 YDRLIEQQVGVGEISAATVANMHELERKLCIIGLHC 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,054
Number of Sequences: 37544
Number of extensions: 296080
Number of successful extensions: 549
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)