Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b16
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   7.0  
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   9.2  

>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 107 KQLISHHYYTFNPDETIYQQNKTKTNHFNFSC 12
           K+ ISH Y T +    +Y  +     H+N  C
Sbjct: 246 KERISHDYITEHSSLVVYPTDTDFVGHYNHYC 277


>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 807

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 38  KTNHFNFSCFKK 3
           KT+HF  SCFKK
Sbjct: 282 KTHHFFISCFKK 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,095
Number of Sequences: 5004
Number of extensions: 30232
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)