Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25b15
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537 103 1e-22
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 73 2e-13
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 61 9e-10
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 51 8e-07
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 51 1e-06
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 43 2e-04
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 30 2.0
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 29 4.6
07_03_0383 - 17476271-17479228,17480466-17480750 28 6.1
>11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537
Length = 208
Score = 103 bits (248), Expect = 1e-22
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 7/114 (6%)
Frame = +2
Query: 245 GPSMEPTLE-SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR-- 415
GPSM P + + +++ + +S RL ++ GD ++ SP NPR+ + KR+ G+ GD V
Sbjct: 83 GPSMLPAMNLAGDVVAVDLVSARLGRVASGDAVLLVSPENPRKAVVKRVVGMEGDAVTFL 142
Query: 416 ---GNFP-KRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPL 565
GN ++ VVP+GHVW++GDN S DSR +GPVP GLI ++ CRVWPL
Sbjct: 143 VDPGNSDASKTVVVPKGHVWVQGDNIYASRDSRQFGPVPYGLITGKIFCRVWPL 196
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +2
Query: 245 GPSMEPTLES---NNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR 415
G SM PTLES + L++ L RGD+++ +SP+ R + KR+ LPGD ++
Sbjct: 37 GTSMNPTLESQQGDRALVSRLCLDARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQ 96
Query: 416 GNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLI 532
+ + +P GH W+EGDN S DSR YGP+ L+
Sbjct: 97 VPAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPLWCALV 135
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 60.9 bits (141), Expect = 9e-10
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = +2
Query: 266 LESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQVV 445
LE ++L E + + GD+++ K PS+ R+ KR+ LPG+ ++ +
Sbjct: 10 LELGAVVLAERSCLQKYQFSHGDVVLFKCPSDHRELFVKRLIALPGEWMQLPGTPDIIKI 69
Query: 446 PRGHVWLEGDNSSNSADSRIYGPVPAGL 529
P GH W+EGDN++ S DSR +GP G+
Sbjct: 70 PEGHCWVEGDNAACSWDSRSFGPEVDGI 97
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 51.2 bits (117), Expect = 8e-07
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Frame = +2
Query: 251 SMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRG---- 418
SM PT + + ++ E ++ +K DI+I KSP P + K + +VR
Sbjct: 139 SMFPTFDVGDRIVAEKVTYYFRKPCINDIVIFKSP--PVLQEVHKGKLVVNGEVRNEEFI 196
Query: 419 ----NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDKITS 580
++ VP V++ GDN +NS DS ++GP+P+ I R + R WP +I S
Sbjct: 197 LEPPSYDMNPVQVPENSVFVMGDNRNNSYDSHVWGPLPSKNILGRSIFRYWPPGRIGS 254
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 50.8 bits (116), Expect = 1e-06
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 419 NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLIRSRVVCRVWPLDKIT 577
N+ +VP G+V++ GDN +NS DS +GP+P I R V R WP +IT
Sbjct: 343 NYEMEPMLVPEGYVFVLGDNRNNSFDSHNWGPLPVRNIIGRSVFRYWPPSRIT 395
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Frame = +2
Query: 329 GDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQ-VVPRGHVWLEGDNSS----NSA 493
GD+++ K P I +R+ L G ++ N K V+ + W+ DN S +
Sbjct: 88 GDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADNQSLKPKEAR 147
Query: 494 DSRIYGPVPAGLIRSRVV 547
DSR++GPVP I RV+
Sbjct: 148 DSRLFGPVPMTDILGRVI 165
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 191 ACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEHISPRL 313
AC H EY+ + +CS P + ++S+N+LL ++P L
Sbjct: 448 ACTAHA-LEYLHE--VCSPPVLHKNIKSSNVLLDADLNPHL 485
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +2
Query: 188 YACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEH-ISPRLQKLRRGDII 340
YAC TH F SG E + +N+ILL EH P+L L +++
Sbjct: 331 YACSTHAVFSPPA-IERLSGGIFEEVIVTNSILLPEHKCFPQLTVLSMANLV 381
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 423 KLPLTLSPGSPFILLHIFCLGFDGLLAMIISPRLSFWS 310
+LP L P PF+L + +G + LL S ++WS
Sbjct: 937 ELPQWLQPQQPFVLKRLDIIGTEELLDKCSSASSTYWS 974
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,595
Number of Sequences: 37544
Number of extensions: 344015
Number of successful extensions: 811
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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