Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b14
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr...    32   0.36 
Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.    29   2.6  
U41270-2|AAA82440.1|  298|Caenorhabditis elegans Cell-death-rela...    28   4.5  
AY303578-1|AAP57300.1|  298|Caenorhabditis elegans cell death-re...    28   4.5  
Z73905-5|CAD44103.1|  175|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF535153-1|AAN17799.1|  175|Caenorhabditis elegans putative tran...    28   5.9  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical ...    27   7.8  

>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
            ZK783.1 protein.
          Length = 2585

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 518  SSLKCQTTLSRAIFCFTLQSCTDCSRDTASVASCRDARASALAPCSDG 375
            S  +  +TLS +  C  +  C + S     VA+CR+   S +  C DG
Sbjct: 2295 SGFRRNSTLSGSETCADIDECAEKSHKCDRVATCRNTFGSHVCTCPDG 2342


>Z68003-1|CAA91975.1|  664|Caenorhabditis elegans Hypothetical
           protein E02H4.1 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 165 TAVYRIYEEFCNETTLHGLKHTVEKSLHW 79
           T +     +FC +TT HG+      SL+W
Sbjct: 37  TQIQHSVRDFCEQTTFHGVNMIFTTSLYW 65


>U76403-1|AAB39735.1|  664|Caenorhabditis elegans degenerin protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 165 TAVYRIYEEFCNETTLHGLKHTVEKSLHW 79
           T +     +FC +TT HG+      SL+W
Sbjct: 37  TQIQHSVRDFCEQTTFHGVNMIFTTSLYW 65


>U41270-2|AAA82440.1|  298|Caenorhabditis elegans Cell-death-related
           nuclease protein4 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 173 SLAESIADFIRVRQRNIAVAILLSVMYLAYQYWGVMFKCEE 295
           +L ++  DF  + QR+I  A    V+Y  +Q W +    EE
Sbjct: 63  TLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEE 103


>AY303578-1|AAP57300.1|  298|Caenorhabditis elegans cell
           death-related nuclease 4 protein.
          Length = 298

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 173 SLAESIADFIRVRQRNIAVAILLSVMYLAYQYWGVMFKCEE 295
           +L ++  DF  + QR+I  A    V+Y  +Q W +    EE
Sbjct: 63  TLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLEE 103


>Z73905-5|CAD44103.1|  175|Caenorhabditis elegans Hypothetical
           protein C32C4.5a protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 395 EPKHGRRGRKPQRRCPDCSLC 457
           +PK G + + P R CP CSLC
Sbjct: 19  QPKKGHKQKCPYRTCP-CSLC 38


>AF535153-1|AAN17799.1|  175|Caenorhabditis elegans putative
           transcription factor MAB-23 protein.
          Length = 175

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 395 EPKHGRRGRKPQRRCPDCSLC 457
           +PK G + + P R CP CSLC
Sbjct: 19  QPKKGHKQKCPYRTCP-CSLC 38


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 345 PILVHDRDPTTITTRCQSRSTGVAAGSHRGGVPTAVCATLE-SETENGARK 494
           PIL+ D    T ++RC+ R     +G  R  V T  C  LE SE +  A K
Sbjct: 357 PILMEDSADFTPSSRCEERR---GSGDGREPVRTIRCGDLERSENDEPAEK 404


>AF024500-3|AAB70363.1|  314|Caenorhabditis elegans Hypothetical
           protein K06H6.3 protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 113 PCKVVSLQNSSYILYTAVMDSLAESIADFIRVRQRNIAVAILLSVMYLAYQY 268
           P  V ++QN+ Y +  A +D+   S+   +R+    I   +LLS     YQ+
Sbjct: 112 PALVYAVQNNLYYVALANIDATTYSVTLQLRILTTAILSVVLLSKKLSGYQW 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,391,952
Number of Sequences: 27780
Number of extensions: 274391
Number of successful extensions: 864
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)