Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b13
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.7  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    27   1.7  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    27   2.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    26   5.1  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    26   5.1  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.8  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    25   8.8  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 206 PVSTTWTPCGPRGAGAGFSVTCAII 132
           P S  WT CG  GA A F    A++
Sbjct: 373 PASCRWTACGLAGAIASFITLAAVV 397


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 124  LNQMMAHVTEKPAPAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKE 264
            ++Q+  +  EK       P G +VV   PD T+ +D E +  L L E
Sbjct: 1050 IDQVALYDKEKRGYVTLFPSGSEVVQFVPDRTYNIDSEYVVYLSLHE 1096


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -1

Query: 617 TDDSIVDRANTVAQSRTVDSLSKAPCVSSNIIATFSPS 504
           TDD       T  + R + +L+K+P + + IIA+ +PS
Sbjct: 458 TDDDFSLSRLTDDEEREIRALAKSPDIHNRIIASMAPS 495


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -1

Query: 593 ANTVAQSRTVDSLSKAPCVSSNIIATFS---PSSSVALNISDHMSMPVVSLSEPPRQLKP 423
           A   A  R  + L  +P   ++  AT S   PSS V  N++   S P+ +  +   +LKP
Sbjct: 182 AEHFAPQRNDEQLGNSPASITSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPELKP 241


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 211 DHTFTLDEEALKSLLLKEDV 270
           DHT + + EALK+LL  +D+
Sbjct: 701 DHTLSENPEALKALLFSKDI 720


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 548 APCVSSNIIATFSPSSSVALN 486
           +P VSS I  +F P +S+ALN
Sbjct: 143 SPRVSSTIAYSFKPKASIALN 163


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 186 CPGRRHRPRPYVHPGRGGPQVSAPE 260
           C G  H   P V  GRGGP++ A E
Sbjct: 398 CKGEDH---PNVGTGRGGPEIDALE 419


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +1

Query: 163 PAPRGPHGVQVVDTGPDHTFTLDEEALKSLLLKEDVXDRAVVVISVAGAFRKGKSFLLDF 342
           PAP  PH V  ++      F+     + S LL ED    A   +  +  +    S ++D 
Sbjct: 207 PAPDVPHDVYCIEPSLGRVFSFPASFVASPLLLEDCNKIASCDLPYSTFY--ANSQVIDK 264

Query: 343 FLRYMHY 363
           F  Y  Y
Sbjct: 265 FSEYFAY 271


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 145 VTEKPAPAPRGPHGVQVVDTG-PDHTFTLDEEALKSLLLKEDVXDRAVVVISVAGAFRKG 321
           +T+   P P  P  V +VD G  +++ ++ E +     +K  V DR +      G+    
Sbjct: 187 ITKTDLPEPESPRRVAIVDFGHSNYSVSIVEFSRGQFHIKSTVCDRNL------GSRNMD 240

Query: 322 KSFLLDFFLRYMHYKY 369
           K+ L+D+F      KY
Sbjct: 241 KA-LIDYFAAEFKEKY 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,221,584
Number of Sequences: 5004
Number of extensions: 41198
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)