Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b09
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   1.9  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   2.5  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    27   3.3  
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    25   7.6  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   10.0 
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    25   10.0 
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   10.0 
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   10.0 

>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 562 RSERWREMQESRNNDICGRC 621
           R +RWRE  E RN D   RC
Sbjct: 171 RKKRWREQNEERNKDNDLRC 190


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 409 QLDPRSGLARQGPRR-LSR*VPRLHPSRPAER 501
           QLDPR+ L  Q PRR LSR   RL    P  R
Sbjct: 205 QLDPRTMLQLQWPRRQLSRLCKRLSLKEPVYR 236


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 666 GNWYIILFERGSCMATPSTDIVISTFLHFAPSFASDFFSCCVNCSFLIASLTTS 505
           G    IL     C+  P+T  +I +F+H    F+S    C +  S  ++SL  S
Sbjct: 245 GPMQCILVISCQCLIVPATFTIIDSFIHTYDGFSS-MTQCLLIISLPLSSLWAS 297


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 672 WRGNWYIILFERGSCMATPSTDIV--ISTFLHFAPSFASDFFSC 547
           WRG+WY+      + +  PS  I+   +T LH      +D + C
Sbjct: 108 WRGDWYVGKGVATASLQHPSGRIISLFNTHLHAPYGKGADTYLC 151


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 406 PQLDPRSGLARQGPRRLSR*VPRLHPSRPAERHRGGQRCNQETTVHT--ATEEVRSERW 576
           P  DP S   R GP  L+R    LH +   +      R + +T + T   T++ R  RW
Sbjct: 33  PGWDPNSEYFRPGPTMLNRLQEHLHDTILPDVLAASYRHDIDTALSTDEHTQKDRLPRW 91


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 365 RAGSTFWS*FCRFSIRSRHIQSHCLNNCL 279
           R GST    F RF+++ R  Q  CL+ CL
Sbjct: 14  RNGSTI---FRRFALKLRPYQEECLSACL 39


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 402 FGAPFPLPLPCQKSRVDILELVLPLFDPFAPYSISL 295
           F   F  PLP +++R+ ILE+    F P  P S  L
Sbjct: 536 FDREFYFPLPNKQARMKILEINSLHFSPKIPESYLL 571


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 181 DLYNKNSNIELRINKR 134
           D++NKN    L++NKR
Sbjct: 268 DIFNKNQEFSLKLNKR 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,006
Number of Sequences: 5004
Number of extensions: 47200
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)