Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b08
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   2.3  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   4.1  
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    24   5.4  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    23   9.4  

>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 147 GGLFEXLQHLEAIHNDPFNW 206
           GGL E +Q+ E + N+PF +
Sbjct: 129 GGLVESVQYEEIVFNEPFEY 148


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +3

Query: 171 HLEAIHNDPFNWNLFKSLTFFFLGLKLF----HDMARNAN 278
           H++   +DP  WN   +   F L L++     HD+ R +N
Sbjct: 213 HIDIYVSDPLTWNHTDTNPCFVLALQVISSFGHDLFRQSN 252


>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 274 QTKSRILNICFINKINY 324
           Q   R+LNIC   K+NY
Sbjct: 182 QVLQRLLNICKAEKVNY 198


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 189 NDPFNWNLFK 218
           NDP NWN F+
Sbjct: 47  NDPLNWNKFR 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,121
Number of Sequences: 5004
Number of extensions: 18098
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)