Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b08
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    26   6.6  
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    26   8.7  

>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +3

Query: 159 EXLQHLEAIHNDPFNWNLFKSL------TFFFLGLKLF 254
           + LQ LEA+ N+ +NW L++S+      TF F G   F
Sbjct: 278 QYLQKLEALRNEEYNW-LWRSVRLSAVTTFIFWGAPAF 314


>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +3

Query: 111 DLC*IRFNGLCEGGLFEXLQHLEAIHNDPFNWNLFK 218
           +LC    NG      FE L++L A++    +W+  K
Sbjct: 195 NLCNTAMNGTLPASAFENLRNLRALNLSKMDWSFNK 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,422,417
Number of Sequences: 37544
Number of extensions: 98709
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)