Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25b07
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 35 0.012
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 34 0.016
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 31 0.15
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.27
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 30 0.35
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.1
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 1.9
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 1.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.3
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 26 4.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 4.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 5.8
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.6
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.6
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce... 25 7.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 7.6
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/93 (20%), Positives = 41/93 (44%)
Frame = +2
Query: 359 STGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPT 538
++GP +S+ + + ++ SP+ + +++ NA+ P + I KPT
Sbjct: 293 TSGPNLTTSNTSPQISSTISSSSFIVESPSVALSTSSTTTITNASTPAANTIISRSSKPT 352
Query: 539 TEDVTSDLLQTEVVDSSSKMEITNPVTENITNP 637
D T+ + ++ +IT+P N + P
Sbjct: 353 --DTTNSISFANTTPENTSTQITSPTAVNSSTP 383
Score = 27.5 bits (58), Expect = 1.9
Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Frame = +2
Query: 326 TDKALLDSEIISTGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPC-SSSYVNATVPI 502
T ++L+S T T ++S + + L+ + S + SSS VN++ PI
Sbjct: 3133 TSSSILNSSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSSIVNSSTPI 3192
Query: 503 SPCNIPSPIKPTTEDVTSDLLQTEVVDSSSKMEITNPVTEN 625
+ ++ + P T T L + + SSS + + +T +
Sbjct: 3193 TSSSVLNSSTPITSSTT--LNTSTPITSSSVLNSSTAITSS 3231
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 34.3 bits (75), Expect = 0.016
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Frame = +2
Query: 209 DVTSTTEDVPET---QEVTGSNGSXXXXXXXXXXXXXXDNNKTDKALL----DSEIISTG 367
D TT +P++ ++VT S S DNN D L D E+I
Sbjct: 355 DGKRTTRPIPKSIAKEDVTNSANSTAPSTGTTVLDDGLDNNYEDIPLYGPSKDEELIKKE 414
Query: 368 PTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPTTED 547
E +D +++QP + PT + P S++ V A + + + +
Sbjct: 415 ELEADTDLGLINTSEINQPANLPDEPTAETSNPVSATTVEAVTTTA----DNKDEEKNDH 470
Query: 548 VTSDLLQTEVVDSSSKME 601
VT D+ Q + +S ++
Sbjct: 471 VTEDVSQNSTIAEASSLQ 488
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 31.1 bits (67), Expect = 0.15
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Frame = +2
Query: 320 NKTDKALLDSEIISTGPTELSSDER---SSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNA 490
N T + + + P +L++ E ++ A +++ ++SP + + ++
Sbjct: 393 NLTRPINANPHLTNHSPNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSMEEQIMDL 452
Query: 491 TVPISPCNIPSPIKPTTEDVTSDLLQ-TEVVDSSSKMEITNPVTENITNPEINPPKMVQD 667
T PIS N P+ + ED DL Q T + SSSK N T N + P I + D
Sbjct: 453 TQPISSTNAPTHL---NED---DLNQFTSNISSSSKPRKDNNKTANSSKP-IPDSEDFMD 505
Query: 668 IDEP 679
I P
Sbjct: 506 ITRP 509
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.27
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +2
Query: 347 SEIISTGPTELSSDERSSPAKDL-DQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPS 523
S + +G + + S S+P+ + P T ++S + I SS + ++ IS I S
Sbjct: 508 SSTLLSGSSAIPSTSSSTPSSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISS-GISS 566
Query: 524 PIKPTTEDVTSDLLQTEVVD-SSSKMEITNPVTEN 625
P+T S +L + SS+ + I++ T +
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 29.9 bits (64), Expect = 0.35
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = +2
Query: 371 TELSSDERSS--PAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPTTE 544
T++++ ++ S AK + + T V+ + Q S S NA SP + P+KP T
Sbjct: 277 TQINNKDKGSHNSAKPVQRSHTYPVA----VPQNTSDSVGNAVTDTSPKTLFDPLKPNTG 332
Query: 545 DVTSDLLQTEVVDSSSKMEITNPVTENITNPEINPPKM 658
+ + ++++ ++ P T N NP ++ P +
Sbjct: 333 TPSPKFISARAA-AAAEGVVSAPFTNNF-NPRLDSPSI 368
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +2
Query: 359 STGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIP-SPIKP 535
ST P + S SP P + SPT P S SY + SP + SP P
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625
Query: 536 T 538
+
Sbjct: 1626 S 1626
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 530 KPTTEDVTSDLLQTEVVDSSSKMEITNPVTENITNPEINPPKMVQDI 670
K +D SD Q + ++ K PV+E T+P I PPK + I
Sbjct: 282 KDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSP-ILPPKNQEPI 327
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.5 bits (58), Expect = 1.9
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = +2
Query: 317 NNKTDKALLDSEIISTGPT-ELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNAT 493
+N K L S+ S G T + S+ S+P + + QP SP++ I P + + V +T
Sbjct: 251 SNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDFSASPSRSIVSP-AKNIVGST 309
Query: 494 VPISPCNIPSPIKPTTEDVTSDLLQTEVVDSSSKMEITNPVTEN 625
P ++ S + P + + L + D +E PV N
Sbjct: 310 ----PVDVLSKLTP---EFHTALSSPKWKDRKEALESMVPVCSN 346
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = +2
Query: 317 NNKTDKALLDSEIISTGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATV 496
++ + K+ S S + SS +SS + + S +K + SSS++ +T
Sbjct: 172 SSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTT 231
Query: 497 PISPCN---IPSPIK-PTTEDVTSDLLQTEVVDS 586
P S + I S K +T+D +S T V S
Sbjct: 232 PASSSSSGAIVSNAKTASTDDSSSASSATSSVSS 265
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 418 IKIFSWRGSLIGG*LCWT 365
IKIFSW +L GG + W+
Sbjct: 324 IKIFSWLATLTGGAIQWS 341
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = +2
Query: 359 STGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIP-SPIKP 535
S T LSS ++ P + + S T S VN+T S + P + +
Sbjct: 419 SVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSASSTPLTSVNS 478
Query: 536 TTEDVTSDLLQTEVVDSSSKMEITNPVT 619
TT S T V +S+ + P+T
Sbjct: 479 TTATSASSTPLTSVNSTSATSASSTPLT 506
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 5.8
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Frame = +2
Query: 347 SEIISTGPTELSSDERS--SPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPC--- 511
S +++ PT L R+ +D PK T D+E +S SP
Sbjct: 638 SSVVTPSPTSLLDPARAVRKVIDGIDPPKEAGAGATADVESAANSPITPPRTWHSPDFTS 697
Query: 512 --------NIPSPIKPTTEDVTSDLLQTEVVDSSSKMEITNP 613
+PS I TED + Q EV S+S + P
Sbjct: 698 KSFEPIERKLPSRISEVTEDSIDEDKQNEVDPSTSARALPPP 739
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.6
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 464 PCSSSYVNATVPISPCNIPSPIKPTTEDVTSDLLQTEVVDSSSKMEITNPVTENITN 634
P SS+ +T P S + S +KP+T + T+ + SSS ++P+ N N
Sbjct: 388 PNSSTSNPSTAPASASPLASTLKPSTANDTNGSSSS----SSSNPRTSSPLASNAEN 440
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.6
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = +2
Query: 359 STGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPT 538
S+ S+ SSP + +PKT S T SS V ++ P SP + SP+KP
Sbjct: 319 SSSRPSASASLASSPTRSAFRPKT---SET-------VSSEVVSSPPTSP--LHSPVKPV 366
Query: 539 TEDVTSDLLQTEV---VDSSSKMEITNPVT--ENITNPEINPP 652
+ + + + E+ V S + E PV ++ P + P
Sbjct: 367 SNEQVEQVTEVELSIPVPSIQEAESQKPVLTGSSMRRPSVTSP 409
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 472 TTWLFNIFSW*NDNRLWLIKIFSWRGSLIGG*LCWTC*Y 356
T ++ NIF N RL LI + +W S IG WT Y
Sbjct: 1224 TIFVINIFILMNQERLNLISLITWMFS-IGVFWIWTFIY 1261
>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 458 EQPCSSSYVNATVPISPCNIPSPIKPTTEDV 550
++P S+ Y P+S N P I P++ +V
Sbjct: 295 QKPNSNYYTGPPTPVSISNTPENIHPSSSEV 325
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 561 KSEVTSSVVGLIGEGMLQGEIGTVALT*DELHGCSIS-LVGETI 433
K EV +++ GL+ EG+ + E+ V T +H S+ L+ E I
Sbjct: 314 KEEVFTALGGLVHEGVSRREVAQVMATLFTIHIASMEFLIAEII 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,245
Number of Sequences: 5004
Number of extensions: 47066
Number of successful extensions: 212
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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