Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25b07
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 31 0.64
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 1.5
10_02_0078 - 4992019-4992594,4993156-4993248,4995984-4996202,499... 30 2.0
08_01_0629 + 5464282-5464304,5464367-5465528 29 3.4
01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266 29 4.5
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519... 28 6.0
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 31.5 bits (68), Expect = 0.64
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 356 ISTGPTELSSDERSSPAKDLD--QPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPI 529
+ + T SS + S AK D P + P+K+ SS + T+ S +IP P+
Sbjct: 1295 VPSSATSSSSTMQESAAKTSDVLSPTGPSILPSKESMTKPSSPLPDGTISSSLLSIPMPV 1354
Query: 530 KPTTEDVTSDLLQTEVVDS 586
K ++ + + + EVV S
Sbjct: 1355 KESSTGLNKIVSKPEVVTS 1373
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +2
Query: 362 TGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPTT 541
T P+ + SP P + SPT P S SY ++V +P + SP P
Sbjct: 1769 TSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHAYSPSSPNY 1828
Query: 542 EDVTS 556
TS
Sbjct: 1829 YSSTS 1833
Score = 29.1 bits (62), Expect = 3.4
Identities = 26/102 (25%), Positives = 38/102 (37%)
Frame = +2
Query: 362 TGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPTT 541
T P+ + SP P + SPT P S SY P SP PS +K T
Sbjct: 1762 TSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSY----SPSSPSYNPSSVKYTP 1817
Query: 542 EDVTSDLLQTEVVDSSSKMEITNPVTENITNPEINPPKMVQD 667
S +S T+P + + +P +P V++
Sbjct: 1818 SHAYSPSSPNYYSSTSPTYSPTSP-SYSQPSPSYSPTSRVEE 1858
Score = 28.7 bits (61), Expect = 4.5
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Frame = +2
Query: 359 STGPTELSSDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPT 538
+T P S SP P + + SPT + P SS+Y + +P + PT
Sbjct: 1650 ATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPT 1709
Query: 539 TEDVTSDLLQTEVVDSSSKMEITNP-VTENITNPEINP 649
+ + +S T+P + T+P +P
Sbjct: 1710 SPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSP 1747
>10_02_0078 -
4992019-4992594,4993156-4993248,4995984-4996202,
4996282-4996345,4996429-4996485,4996573-4996671,
4997296-4997327
Length = 379
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +2
Query: 422 PKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPTTEDVTSDLLQTEVVDSS-SKM 598
PKT + PTK + S V AT P+ S +K TE+ S + S S
Sbjct: 260 PKTRRLLPTKSAPTASTRSTVAATKPVEDLK-SSGMKLATEEAPSPSSNAAMPGSEPSAP 318
Query: 599 EITNPVTENITNPEINPPKMVQDIDEP 679
+ ++++ E++ P ++D+DEP
Sbjct: 319 PLPKSAEDDMSIDEVDIP--IEDMDEP 343
>08_01_0629 + 5464282-5464304,5464367-5465528
Length = 394
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 449 KDIEQPCSSSYVNATVP---ISPCNIPSPIKPTTEDVTSDLLQTEVVDSSSKME 601
+ +E+ SSS + T+P I CNIP +K T++ L T KME
Sbjct: 37 EQMEERASSSAASTTIPWNLIWKCNIPQKVKIFAWKATTNCLATMENKKKRKME 90
>01_06_1467 + 37570289-37570771,37571818-37571892,37572006-37572266
Length = 272
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = +2
Query: 395 SSPAKDLDQPKTVI-VSPTKDIEQPCSSSYVNATVPIS--PCNIPSPIKPTTEDVTSDLL 565
SS D+D+ +++I +P+ + S A++P+S P +P+P KP+ + ++
Sbjct: 14 SSAQSDMDEIESLIYAAPSATVLPARPPSPPRASIPVSTSPAPLPAPAKPSLPGASVPII 73
Query: 566 QTEVVDSSSKMEITN----PVTENITNP 637
+ +S + I + P +T P
Sbjct: 74 VPQAPPASVSVPIASDGFGPPPNTLTEP 101
>10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,
5193771-5193837,5194177-5195170
Length = 1023
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/97 (19%), Positives = 44/97 (45%)
Frame = +2
Query: 383 SDERSSPAKDLDQPKTVIVSPTKDIEQPCSSSYVNATVPISPCNIPSPIKPTTEDVTSDL 562
S+ ++ P D+ + + + +DI++ S + + + ++ T + + +
Sbjct: 899 SEIKTRPITDMVDAQVLEEANEEDIKEVASLAEMCLKLKGEERPTMKKVEMTLQLLRTKT 958
Query: 563 LQTEVVDSSSKMEITNPVTENITNPEINPPKMVQDID 673
+ + VD + EI +TE ++PEI P D+D
Sbjct: 959 MNSSQVDPTIDQEIQTVLTEGASDPEIQPLVTNLDVD 995
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,476,427
Number of Sequences: 37544
Number of extensions: 280518
Number of successful extensions: 756
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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