Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b06
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    27   2.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   3.5  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   4.7  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   4.7  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   6.2  
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    25   8.2  

>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 343 DDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQDADDILYHQVVEDDHSPCSK 501
           D++D  +   KKK   K+ +A  N    F D Q  ++    +  ED   P  K
Sbjct: 64  DEVDEEVVPVKKKPSKKSKKAKANAFEAFADEQSVEE----EEEEDSEKPVRK 112


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 316 PRVIKTLRLDDIDRSIAGKKKKERIKNLRAVCNKILE 426
           P++ +T        S + KK  +++K +R +C++ LE
Sbjct: 343 PKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRSLE 379


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 397 LRAVCNKILEFCDRQDADDILYHQVVEDD-HSPCSKEID 510
           L+A C K  ++CD ++   I   +VVE D  S  +KE++
Sbjct: 50  LQAACQKFQDYCDLEEIRIIEAKRVVERDLRSLEAKEVE 88


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 280 NMDLKDNEVTTKPRVIKTLRLDDIDRSIA 366
           N+++ + +  +KP + KT+ L+D  RS+A
Sbjct: 125 NLEIYEIQKNSKPNLTKTISLNDRPRSLA 153


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
 Frame = +1

Query: 172 EGGCLKPLLFIMEGM---TKEESYAERRQLFKDIWITASNMDLKDNEVTTKPRVIKTLRL 342
           E  C +    I+EG+   T+     E + ++ D+  ++    + D+E+  +  V+++   
Sbjct: 320 ESKCFENEQAIIEGVKDFTEFPDLEETQIIYSDLIASSEVSPIYDSELKYES-VLESKSS 378

Query: 343 DDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQ 441
            +   +I  KK  ER+ +L   C K L F D++
Sbjct: 379 RNEQATIKEKKDNERVLDLSQQCTKFL-FSDQK 410


>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +1

Query: 208 EGMTKEESYAERRQLFKDIWITASNMDLKDNEVTTK 315
           + + ++   +E+ +LF+  WIT  N+D+K  + ++K
Sbjct: 217 DDVEEDRVLSEKMELFQ--WITEENLDIKKQKSSSK 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,010
Number of Sequences: 5004
Number of extensions: 52485
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)