Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b06
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   2.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   2.5  
Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 292   KDNEVTTKPRVIKTLRLDDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQ---DADDILY 462
             K+ +  TKP V +T  + + D+S   K+  E++K    +  K  +  D +   DA + + 
Sbjct: 13185 KEQDEPTKPAVSETQMVTEADKSKKQKETDEKLKLDAEIAAKTKQEADEKSKLDAQEKI- 13243

Query: 463   HQVVEDDHSPCSKEID 510
              +V EDD +   KE++
Sbjct: 13244 KKVSEDDAARKEKELN 13259


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
 Frame = +1

Query: 292   KDNEVTTKPRVIKTLRLDDIDRSIAGKKKKERIKNLRAVCNKILEFCDRQ---DADDILY 462
             K+ +  TKP V +T  + + D+S   K+  E++K    +  K  +  D +   DA + + 
Sbjct: 13185 KEQDEPTKPAVSETQMVTEADKSKKQKETDEKLKLDAEIAAKTKQEADEKSKLDAQEKI- 13243

Query: 463   HQVVEDDHSPCSKEID 510
              +V EDD +   KE++
Sbjct: 13244 KKVSEDDAARKEKELN 13259


>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical protein
            F54F11.2 protein.
          Length = 1589

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 427  FCDRQDADDILYHQVVEDDHSP 492
            +C+ +  DD LY Q++ D HSP
Sbjct: 1526 WCEVRRTDDALYTQIMVDPHSP 1547


>U61955-7|AAV58862.1|  456|Caenorhabditis elegans Hypothetical
           protein M03D4.4b protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 405 CSQVFNAFLFLFTSNRSIYIVKAEGFDDSWFGRDFV 298
           C Q    F+F F  NR + I +  GF     GR F+
Sbjct: 125 CPQCHKTFIFKFDLNRHMKIHQERGFSCQQCGRSFL 160


>U61955-6|AAC24408.2|  505|Caenorhabditis elegans Hypothetical
           protein M03D4.4a protein.
          Length = 505

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 405 CSQVFNAFLFLFTSNRSIYIVKAEGFDDSWFGRDFV 298
           C Q    F+F F  NR + I +  GF     GR F+
Sbjct: 174 CPQCHKTFIFKFDLNRHMKIHQERGFSCQQCGRSFL 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,672
Number of Sequences: 27780
Number of extensions: 293658
Number of successful extensions: 793
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)