Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25b06
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    25   0.54 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.2  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   2.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.8  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 343 DDIDRSIAGKKKKERIKNLRAVCNK 417
           D + + +  ++ K+ IKNLR VC+K
Sbjct: 21  DTMSKKMTIEEAKKTIKNLRKVCSK 45


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -3

Query: 405 CSQVFNAFLFLFTSNRSIYIVKAEGFDDSWFGRDFVV 295
           C     A  FL  S  S Y+V   G+  S   RDF V
Sbjct: 3   CMLEIAARSFLLLSIASTYVVSVAGYKHSRRHRDFTV 39


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 379 KERIKNLRAVCNK 417
           K+ IKNLR VC+K
Sbjct: 7   KKTIKNLRKVCSK 19


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 580 PADTLNCEKKLIHSNKKSRHTSPIKKSCCR 669
           P DT++ ++ + H      H  P KK+CCR
Sbjct: 377 PEDTMSVDR-MQHCEL---HMQPRKKNCCR 402


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 580 PADTLNCEKKLIHSNKKSRHTSPIKKSCCR 669
           P DT++ ++ + H      H  P KK+CCR
Sbjct: 377 PEDTMSVDR-MQHCEL---HMQPRKKNCCR 402


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 343 DDIDRSIAGKKKKERIKNLRAVCN 414
           DD++  I G   KE I+N   V N
Sbjct: 394 DDVNFRILGANVKELIRNTHCVNN 417


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = +1

Query: 598 CEKKLIHSNKKSRHTS 645
           CE+ +I +++++RH S
Sbjct: 330 CEQDIIQNDRRTRHLS 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,308
Number of Sequences: 438
Number of extensions: 3382
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)