Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25b02
(500 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045 31 0.52
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 2.8
12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112 28 3.7
08_02_0217 - 14397335-14397553,14397627-14398145,14398242-143984... 28 3.7
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204... 28 4.8
07_01_0786 + 6122144-6123187 28 4.8
10_01_0259 - 2719483-2719556,2719681-2720803 27 6.4
07_01_1173 + 11092482-11093465,11093552-11093914 27 6.4
05_01_0493 + 4113869-4116728,4116859-4117370 27 6.4
03_06_0404 + 33692534-33693607 27 8.5
>03_06_0620 - 35142280-35142294,35143149-35143294,35144826-35145045
Length = 126
Score = 31.1 bits (67), Expect = 0.52
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +1
Query: 178 DFEDRYSACFVDFGLKTVT-GLLIGSMMGSFFLRG-YKKWP-MYIGGGLGFGMAYSNCEN 348
D + ++ AC +D ++ V L G+ G R +W + +G G+G G AY+ C
Sbjct: 42 DLDAKWDAC-LDISIRRVAYSTLGGTFAGLLLFRSPTTRWASVALGAGVGIGAAYTECSY 100
Query: 349 SLNDYLLAMNPKPCSI 396
N +PK ++
Sbjct: 101 LFNGAPPKWSPKVSTV 116
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 257 WVVSS*EATRNGQCTSAAVSVS-GW 328
W+VS+ +G+CTS+A+S S GW
Sbjct: 1111 WIVSASSRILDGECTSSALSYSLGW 1135
>12_01_0994 - 10077322-10077696,10078303-10078839,10079062-10079112
Length = 320
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -3
Query: 354 EAVLAIRIRHPETETAADVHWPFLVASQEETTHHAAY*EPCHCFQSEINE 205
EA+ A R P A + WP V + E TT + HC ++E
Sbjct: 254 EAMAAAASRDPHDTRKASLTWPPSVVTSEPTTSSPSLSRALHCRSVSMDE 303
>08_02_0217 -
14397335-14397553,14397627-14398145,14398242-14398418,
14398667-14399017
Length = 421
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 316 GFGMAYSNCENSLNDYLLAMNPKPC 390
G G++ S CEN Y NPKPC
Sbjct: 396 GNGVSSSKCENVRAKYAGFQNPKPC 420
>11_06_0223 -
21419128-21419397,21419493-21419747,21420243-21420414,
21420530-21420757,21420916-21421049,21421309-21421392,
21421554-21421760,21421871-21422203,21422343-21422449,
21422823-21422988,21423127-21423230,21423347-21423507,
21423595-21424495,21424642-21424732,21424837-21425127,
21425491-21425575,21425665-21425747,21427653-21427773,
21427785-21428260
Length = 1422
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 122 NRNIYILSSKQLLVK*FKGINVFNKSKMNEATIS 21
N IYI QL++ F + VF ++KM TIS
Sbjct: 567 NSFIYIFKVTQLIILAFMSMTVFLRTKMPSGTIS 600
>07_01_0786 + 6122144-6123187
Length = 347
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 145 FMREMSKTDKRDFEDRYSACF--VDFGLKTVTGLL 243
++ E+ D+R F DRY CF VD L + G +
Sbjct: 153 YIEELVDGDRRAFRDRYDCCFLWVDVQLPVLHGFV 187
>10_01_0259 - 2719483-2719556,2719681-2720803
Length = 398
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 295 MYIGGGLGFGMAYSNCENSLNDYLLAMNPKPCSIKKRP*TVLPSSLGCSEHVLYYCFLIL 474
++ GG F YS+ ++ D + P PC + P P+ +G + + L Y LIL
Sbjct: 180 VFTGGCRAFACVYSSLTDAWGDLISTPAPLPCELCDTP----PALVGEASYWLSYGGLIL 235
>07_01_1173 + 11092482-11093465,11093552-11093914
Length = 448
Score = 27.5 bits (58), Expect = 6.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 234 CHCFQSEINETCRVPIFKVTFVGFTHFSHELSHRY 130
CH +S CR+P F H HEL+ RY
Sbjct: 138 CHSLRSADLTNCRLPAAAAATASFPHL-HELTLRY 171
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +1
Query: 163 KTDKRDFEDRYSACFVDFGLKTV 231
K D DRY AC DFGL V
Sbjct: 910 KADNILLADRYEACLADFGLARV 932
>03_06_0404 + 33692534-33693607
Length = 357
Score = 27.1 bits (57), Expect = 8.5
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 145 FMREMSKTDKRDFEDRYSACF--VDFGLKTVTGLL 243
++ E+ + D R F +RY CF VD L+ + G +
Sbjct: 153 YVEELVEGDGRAFRERYECCFLWVDVDLEVLRGFV 187
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,720,176
Number of Sequences: 37544
Number of extensions: 236653
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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