Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a22
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    61   1e-10
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    32   0.099
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    31   0.23 
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   0.53 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   6.5  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   8.6  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 33/85 (38%), Positives = 43/85 (50%)
 Frame = +1

Query: 436 LLDELDMYFLPVLNPDGLRYNLQKNILWSKNRQTIPNKFCKKKKIATGVNIDRNWLLNSV 615
           LLD+ +  F+PVLN DG  Y    + LWSKNRQ + N  C       G+N+D NW     
Sbjct: 278 LLDKFEWIFIPVLNVDGYEYTWSNDRLWSKNRQPLNNSEC------FGINLDANWAF-GF 330

Query: 616 ETHNKECNHVYQGAKGFTEEETKAL 690
             +   C++ Y G   F   ET AL
Sbjct: 331 NGNIDPCSNEYGGLSPFQANETMAL 355


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 25/83 (30%), Positives = 36/83 (43%)
 Frame = +2

Query: 56   LSFKLLVFGIHNYNLYEVTAFNDIERALLYSMHMKEGNIIFLNSVTSEATIPMNVIVIDK 235
            LS   LVF +HNY    +   ++I+ AL +       N+  + +   E T     IVI  
Sbjct: 1237 LSSLALVFALHNYKPTPLYVMDEIDAALDFK------NVSIVANYIKERTKNAQFIVISL 1290

Query: 236  KVNFFEKKLNKLYIEYTLKETKS 304
            + N FE     + I  T   TKS
Sbjct: 1291 RSNMFELSSRLVGIYKTANMTKS 1313


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = +1

Query: 475 NPDGLRYNLQKNILWSKNRQTIPNKFCKKKKIATGVNIDRNWLLNSVETHNKECNHVYQG 654
           N D L Y    N+  S+  + +PNK      +    N D N LL S+    K  NH Y  
Sbjct: 44  NRDTLSYFNISNLEPSERSEWLPNKRVNAAFVTLARNEDLNDLLKSIRKLEKTFNHKYHY 103

Query: 655 AKGFTEEE 678
              F   E
Sbjct: 104 GWVFLNNE 111


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 239 VNFFEKKLNKLYIEYTLKETKSEYPR 316
           +N+  +KL +++IE TLK  + EY R
Sbjct: 431 INYVNEKLQQIFIELTLKTEQEEYVR 456


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 182  NSVTSEATIPMNVIVIDKKVNFFEKKLNKLYIEYTLKETK 301
            N  T   T+ +N  V DK+ + F K++NKL +   +++ +
Sbjct: 1241 NIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQVR 1280


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 215 NVIVIDKKVNFFEKKLNKLYIEYTLKETKSEYPRAKRNVLLFFLVVKMQEIR---ILQLS 385
           NV +    V  +  +   +  E  +  TK +Y R   +V LF+    ++EIR    LQL 
Sbjct: 176 NVALPQAPVLLWPAEFGMVIEEEVVDRTKEDYERDWDDVFLFYAAKIVKEIRDDIYLQLK 235

Query: 386 Y 388
           Y
Sbjct: 236 Y 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,594
Number of Sequences: 5004
Number of extensions: 53321
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)