Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a21
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.48 
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   1.5  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   3.4  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   4.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   4.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   7.8  

>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 395

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 118 ENIEICEQDNRVFDVTQAQ-ELINKLEDYKCSSVDLEKQLLELETE 252
           +N E   + ++  + T  Q ELIN LE  K S + LEKQLLE   E
Sbjct: 285 QNKEQSSEGSKTANQTHEQKELINSLEK-KVSDIALEKQLLEEAVE 329


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 184 NKLEDYKCSSVDLEKQLLELETEVRHIQVEMESVK 288
           NKL+  K SS  LE+Q+  + +E+   + E+ES++
Sbjct: 859 NKLQIIKSSSSGLEEQMQRINSEISDKRNELESLE 893


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/56 (28%), Positives = 32/56 (57%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRH 261
           +++   + EN++  E+D+   DVT A  L NK  DY   SV  + + L  ++++++
Sbjct: 340 EESEFMDSENVDD-EEDDDFLDVTTATSLQNKSTDY--GSVKRKTENLNSDSDIQN 392


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 172 QELINKLEDYKCSSVDLEKQLLELETEVR-HIQVEMESVK 288
           ++L N LE Y+     L+ QL+ LE ++R  ++ E+ESVK
Sbjct: 17  RQLGNLLEQYEVEIARLKSQLV-LEKKLRIQVEKELESVK 55


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 342 LFKASILSAPAATRSGGTLHGLHFDLDVPN 253
           +F A IL     T+ G      HF+LDV N
Sbjct: 137 VFPAPILDVRELTKPGAVKRVFHFELDVSN 166


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 148 DYPVRKFLYFHDFRICCPGLQRRRHPYFVHFFYNY 44
           +YP ++F   H  R     LQ  +H YF+HF  +Y
Sbjct: 601 NYPTQEF---HLLRPTIKILQISKHEYFLHFSSSY 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,468
Number of Sequences: 5004
Number of extensions: 34402
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)