Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a19
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    28   2.4  
03_05_0675 + 26630466-26632070                                         27   4.3  
12_01_0412 + 3283425-3283518,3284046-3284205,3284532-3284634,328...    27   7.5  
08_02_1115 + 24394944-24396628,24397347-24397386,24397970-243980...    27   7.5  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   7.5  
01_01_0468 + 3454254-3454574,3454688-3454828,3454907-3455059           27   7.5  

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +3

Query: 117 NKCGTNEVY-KPCQFYEEYTCWTSSSKMERTRTLSKKFKHCVDGCYCDKGLVRSYSKGPC 293
           N CG  ++  K C   E  TC       E+    SK  K+   GC+C K   RS  + PC
Sbjct: 452 NPCGCQQMCGKDCACVENGTC------CEKYCGCSKSCKNRFRGCHCAKSQCRS-RQCPC 504

Query: 294 IEAGK 308
             A +
Sbjct: 505 FAASR 509


>03_05_0675 + 26630466-26632070
          Length = 534

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
 Frame = +3

Query: 183 SSSKMERTRTLSKKFKHCVDGCYCDKGLVRSYS----KGPCIEAGKCRDKK--IEKILDN 344
           SSS   + +  SK FK  V  C C +   R  +    + P  +  + RD    +  +LD 
Sbjct: 283 SSSAARKKKKFSKAFKDMVSSCLCQEPAKRPSAEKLLRHPFFKGCRSRDYDYLVRNVLDA 342

Query: 345 LPIYKKR 365
           +P  ++R
Sbjct: 343 VPTVEER 349


>12_01_0412 +
           3283425-3283518,3284046-3284205,3284532-3284634,
           3286339-3286548
          Length = 188

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 97  LRAPH**INAAQTKCTSRVSSMKSTRVGPRQAKWKELEHC 216
           +  PH  +++   KC +  SS K  R+     K+  LE C
Sbjct: 39  VETPHCTMDSCNAKCKAEASSRKCNRMTASCHKYARLEKC 78


>08_02_1115 +
           24394944-24396628,24397347-24397386,24397970-24398005,
           24398541-24398574,24398823-24398896
          Length = 622

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 285 GPCIEAGKCRDKKIEKILDNLPIYKKRIE 371
           G CI+ G CRD K+   +  + + +K +E
Sbjct: 236 GFCIKVGFCRDAKVASAMVGMYVREKSVE 264


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 102  GTALINKCGTNEVYKPCQFYEEYTCWT-SSSKMERTRTLSKKFKHCVDGCYCDKGLV 269
            G   + KCG + +      +E   CW+ ++    R +  +K    C  G    KGL+
Sbjct: 1692 GMVYMEKCGNSRLKDAGDCFELSACWSLAADAYFRAKCYAKCLSMCSKGKLFQKGLL 1748


>01_01_0468 + 3454254-3454574,3454688-3454828,3454907-3455059
          Length = 204

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 304 GSVETKKLKKSLTIYRFIRKELNKFTSLYIHKK 402
           G    +K  ++  I+RF+R +L +F S++  KK
Sbjct: 63  GRAPPEKNPRACRIFRFLRSKLARFPSIWRRKK 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,703,611
Number of Sequences: 37544
Number of extensions: 175847
Number of successful extensions: 408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)