Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a16
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb...    40   5e-04
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    33   0.042
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    32   0.073
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    31   0.13 
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    31   0.22 
SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces po...    30   0.39 
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    29   0.68 
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    28   1.2  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    28   1.6  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    27   2.1  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   4.8  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    26   4.8  
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    26   6.3  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    26   6.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.3  

>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 339

 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
 Frame = +1

Query: 274 DLKDKTCLITGANSGVGLEMTKCLNLCGCTVLMACRNTYAASVVAK--NTCLKPDSLRLY 447
           DL  K  L+TG++ G+G      L   G  V +A RN      V K  +  ++   +R  
Sbjct: 39  DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSKIRFL 98

Query: 448 ELNLASLRSVRKCSDDLLNKEKKLILL 528
            L+L    SV + ++  + KE+KL +L
Sbjct: 99  RLDLLDFESVYQAAESFIAKEEKLHIL 125



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +3

Query: 510 KKIDIVILNAGIFGLPWTETVDKLEITFQVNYLSQYY---LLMNIEDILADNAR---VVI 671
           +K+ I++ NAGI   P+  T D  E+  Q NYLS Y    LL+      A+  R   V I
Sbjct: 120 EKLHILVNNAGIMNPPFELTKDGYELQIQTNYLSHYLFTELLLPTLRRTAEECRPGDVRI 179

Query: 672 ISSESHRYVTLPFNEI 719
           +   S  Y+  P++ I
Sbjct: 180 VHVASIAYLQAPYSGI 195


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 33.1 bits (72), Expect = 0.042
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 259 VTKGLDLKDKTCLITGANSGVGLEMTKCLNLCGCTV-LMACRNTYAASVVAK 411
           +T    LK KT LITG + G+G  + K     G  V L+  RN  A    A+
Sbjct: 1   MTSMFSLKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRNKKALEYAAE 52


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 32.3 bits (70), Expect = 0.073
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 295 LITGANSGVGLEMTKCL-NLCGCTVLMACRNTYAASVVAKNTCLKPDSLRLYELNLASLR 471
           +I G N G+GL + K L N  G TV  + R   +AS + K+      ++ + +L++ SLR
Sbjct: 10  VIVGGNRGIGLSLVKELSNKEGVTVFASARGPGSASEL-KDWSKTHSNVHIIKLDVTSLR 68

Query: 472 SVR 480
           S +
Sbjct: 69  SAK 71


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 19/82 (23%), Positives = 39/82 (47%)
 Frame = +1

Query: 283 DKTCLITGANSGVGLEMTKCLNLCGCTVLMACRNTYAASVVAKNTCLKPDSLRLYELNLA 462
           +K   I G N G+GL + K L+    TV+ A      A+   +       ++ + +L+++
Sbjct: 5   NKIYFIAGGNRGIGLSLVKELSNREGTVVFASARKPEAATELQEWSKSHSNVHIIKLDIS 64

Query: 463 SLRSVRKCSDDLLNKEKKLILL 528
           SL S  + + ++     K+ +L
Sbjct: 65  SLESANEAAQEVAKAVGKVDVL 86


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 283 DKTCLITGANSGVGLEMTKCLNLCGCTVLMACRNTYAASVVAKNTCLKPDSLRLYELNLA 462
           +K   I G N G+GL + K L+    TV+ A      A+   +       ++ + +L+++
Sbjct: 5   NKIYFIAGGNRGIGLSLVKELSNRKGTVVFASARKPGAATKLQEWSKSHSNVHIIKLDVS 64

Query: 463 SLRSVRKCSDDL 498
           SL S  + + ++
Sbjct: 65  SLESANEAAQEV 76


>SPCC663.09c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = +1

Query: 283 DKTCLITGANSGVGLEMTKCLNLC-GCTVLMACRNTYAASVVAKNTCLKPDSLRLYELNL 459
           +K   I G N G+GL + K L+   G TV  + R   AA+ + + +   P +++  EL++
Sbjct: 5   NKVYFIAGGNRGIGLSLVKELSSREGTTVFASARKPEAATELQEWSKSHP-NVKTVELDV 63

Query: 460 ASLRSVRKCSDDL 498
            S +S  + +  +
Sbjct: 64  TSQQSANEAAQSV 76


>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +1

Query: 277 LKDKTCLITGANSGVGLEMT-KCLNLCGCTVLMACRNTYAASVVAKNTCLKPD-SLRLYE 450
           L  KT LITGA+SG+G     +   +    +++A R       +AK    K + S+   +
Sbjct: 4   LDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFSTVEEIAKELESKYEVSVLPLK 63

Query: 451 LNLASLRSV 477
           L+++ L+S+
Sbjct: 64  LDVSDLKSI 72


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 214  YFDLNFRIHGPTGEEVTKGLDLKDKTCLITGANSGVGLEMTKCL 345
            YFD NF +     ++V KGL     TC+     SG G   ++ L
Sbjct: 1247 YFD-NFTVQYAEAKDVIKGLLFSILTCIYNRITSGQGFSYSRLL 1289


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 421 LKPDSLRLYELNLASLRSVRKCSDDLLNK-EKKLILLS*MLEFSAYLGQRLWIN 579
           +K +  R+Y  N  + +SV +  ++L+N  EKKL  L+   E++   G++ W N
Sbjct: 39  VKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLA-WKEYATADGKKYWYN 91


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 494 SSEHFRTDLSEARFNS*SRRLSGLRHVFLATTLAAYVFRHAMRTVHPHK 348
           +S ++ T L  + F      LS  RH     + + Y  R A RTV PHK
Sbjct: 2   ASHNYETPLKSSSFQHLVGTLSQRRH--FTPSRSRYTPRSAQRTVTPHK 48


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
 Frame = +1

Query: 235 IHGPTGEEVTKGLDLKDKTCLITGANSGV---GLEMTKCLNLCGCTVLMACRNTYAASVV 405
           + G  G   +  ++   + C+  G ++ +    LE  + L        +  + T+  +++
Sbjct: 613 LRGHVGRVYSVTINPSRQQCISAGTDAKIRIWNLESGELLQTLHGHSNLVSQVTFNQNIL 672

Query: 406 AKNTCLKPDSLRLYELNLASLRSVRKC 486
              +     SLR+++LN  S R + KC
Sbjct: 673 VSASAPPDTSLRVWDLNTGSCRDILKC 699


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +1

Query: 139 TTRNLILNDKVRAFSSSKVKSLVENYFDLNFRIHGPTGEEVT 264
           T R+++LNDK+ A   S ++S   ++  L+  +      ++T
Sbjct: 395 TIRSMLLNDKLSATQRSSLESFYTSFISLDKNLSSKFVNQIT 436


>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 295 LITGANSGVGLEMTKCLNLCGCTVLMACRNTYAASVVAK 411
           ++TGA  G+G E    L + G  V++  R       +AK
Sbjct: 61  VVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAK 99


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +1

Query: 277 LKDKTCLITGANSGVGLEMTKCLNLCGCTVLMACRNT 387
           LK K C++ GA  G+G  +       G  V++    T
Sbjct: 19  LKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTT 55


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 329 SKPTPLFAPVIKHVLSFKSRPFVTSSPVGPCI 234
           S P P  APV+  V S   RP V   P  P +
Sbjct: 633 SVPQPPAAPVVPEVPSVPQRPAVPVVPEAPSV 664


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = -2

Query: 590 RYFQFIHSLCPR*AENSSIQDNNINFFSLFKRSSEHFRTDLSEARFNS*SRRLS 429
           RY   +H+   +   +S ++ +N N     K    H R+  S+  +NS + R++
Sbjct: 36  RYQMKVHAAPRQKTLHSFLKKDNANIHDFTKVEKPHIRSSKSKVSYNSITSRVT 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,556
Number of Sequences: 5004
Number of extensions: 58336
Number of successful extensions: 164
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)