Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25a13
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    31   0.14 
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|...    30   0.25 
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   1.00 
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   3.0  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    26   4.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.0  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   4.0  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.3  

>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 510 RVVICGWVQYSRLSK---FLLLRDAYGLTQCIVGSDDTDLSS 626
           RV + GWV   R  K   F++LRD  G  QC++     D +S
Sbjct: 143 RVRVNGWVHRMRTQKGIIFIILRDGTGFLQCVLSGKVYDRAS 184


>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 240 MLGHKI---NPNKIKNVCTLLRRVNTLKHLCNNNRTINSFIKRNENVTSNIPFCRRAHN 407
           MLG +I    PN+   +C L++  N+ +   ++NR  N   +RN   +SN+ F RR  +
Sbjct: 1   MLGRRIFSPAPNRGFILCNLIQSNNSTRRGFSDNRKFN---ERNSEASSNVGFQRRVRS 56


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
 Frame = +3

Query: 249  HKINPNKIKNVCTLLRRVNTLKHLC-NNNRTINS-FIK-RNENVTSNIPFCRRAHNIKNK 419
            +K NP++ K +C+++R  N  K +     RT  S F+   + N  S++      +N+K  
Sbjct: 953  NKRNPDENKLLCSIIRTANESKRIIFGFIRTFESQFLTLLSTNDESSLILKLLLNNLKQS 1012

Query: 420  HKIDDGRLIINGFTIRTHTCGELR--PKNVGERV 515
              +    L+I GF I +     LR  P  VG RV
Sbjct: 1013 GGVYSLALLILGFDISSTNVITLRDQPGYVGSRV 1046


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +3

Query: 270 IKNVCTLLRRVNTLKHLCNNNRTINSFIKRNENVTSNIPFCRRAHNIKNKHK 425
           +K+V T  R+V  +  LCN       F+K N+N+ SN  F   A N K+  K
Sbjct: 2   LKSVGTNGRKVPKIASLCN-------FLKFNKNIHSNPDFLAIAENWKSYWK 46


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 640 DSSCKLDKSVSSLPTMHCVSP 578
           D S KL  SV + PT H VSP
Sbjct: 241 DPSLKLTLSVGATPTAHSVSP 261


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 255  INPNKIKNVCTLLRRVNTLKHLCNNNRTINSFIKRNENVTS-NIPFC---RRAHNIKNKH 422
            ++ N+ KN  ++    N   HL +NN  + S   R+  + S ++  C   + AH +K +H
Sbjct: 1780 LSANQFKNSKSIS---NVSTHLASNNLNLAS---RDTPIKSPSVGICEEKQEAHKVKKRH 1833

Query: 423  KIDDGRL 443
             ID   L
Sbjct: 1834 NIDSANL 1840


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 499 MSVKESSYAAGCSIHVCPNFYCFETPMD 582
           +S  E S+ +G SI  C NFY    P D
Sbjct: 585 LSYSEQSFDSGVSILSCQNFYNIFHPTD 612


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 192  HVSCKL-TGRVKTEIATMLGHKINPNK 269
            HV+  L TG++   +ATM+G   +PN+
Sbjct: 2331 HVASTLMTGQIVGAVATMIGRGASPNR 2357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,795
Number of Sequences: 5004
Number of extensions: 49075
Number of successful extensions: 110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)